(Frequently also crosslisted as 18-791, CMU ECE : 42-735, CMU BME)
Instructor |
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| John Galeotti | galeotti+mimia ATcs.cmu.edu |
Usually meets with students after class |
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TA |
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| Peiyun Hu | peiyunh+mimia ATandrew.cmu.edu |
By email or appointment |
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We comply with both the U. Pitt. and CMU calendars. Lectures are Tuesday and Thursday from 10:30-11:45 AM, in NSH 1305, Carnegie Mellon University.
Shadow Program: 6 radiology sessions and 0-2 (TBD) pathology sessions, 8:30-9:30 AM weekday mornings (and possibly other times optional for shadowing pathology).
Online schedule, directions, and required UPMC confidentiality agreement. Reports should be emailed to your TA and Galeotti.
Last Year's Website has been archived.
Key ITK Documentation:
Note about videos: Lecture videos were recorded in 2012, and you can downlaod the lecture videos from the 2012 schedule here. Be sure to download the videos (right-click the video's link then select either "download" or "save-as") rather than try to watch them in your browser. Please let me know if you notice any problems or video content that should be either fixed or trimmed out if it's not relevant to a general audiance (please reference the 2012 lecture number and the playing time into the video at which the problem occurs).
| Week # | Date | Updated for 2018? | Material | Video and .pptx files |
|---|---|---|---|---|
Week 1 |
Tu 1/16 |
Y | Power Point Video (from 2012) |
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Th 1/18 |
Y | Syllabus WARNING: Quiz on book reading next class! |
Power Point Video (from 2012) |
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Week 2 |
Tu 1/23 |
Y | To prepare for the quiz, I suggest focussing on big-picture concepts and major themes, what algorithms/methods are trying to do, what they are good for, and (if the text goes over it) when/how they typically fail. Lecture 3: Math & probability background |
Power Point Video (from 2012) |
Th 1/25 |
Y | Lecture 4: ITK background & basic usage |
Power Point Video (from 2012) |
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Week 3 |
Tu 1/30 |
Y | Lecture 5: Image characterization Assignment #2 given. |
Power Point |
Th 2/1 |
Y | Lecture 6: Linear processing |
Power Point Video (from 2012) |
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Week 4 |
Tu 2/6 |
Y | Finish Linear processing (resume Scale Space at slide 15) |
Power Point Video (from 2012) |
Th 2/8 |
Y | Lecture 8: ITK registration |
Power Point Video (from 2012) |
|
Week 5 |
Tu 2/13 |
Y | Finish Image relaxation (resume Minimization at slide 18) |
Power Point Video (from 2012) |
Th 2/15 |
Y | Lecture 10: Segmentation, part 1 continued (using previous notes, start with slide 5) HW3 may be posted later today.
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Week 6 |
Tu 2/20 |
Y | Lecture 11: Segmentation, part 3 (active contours) Assignment #3 is now assigned, due 5pm Thursday (2 day extension)
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Power Point Video (from 2012) |
Th 2/22 |
Y | Follow Up: HW3—easy/helpful? Issues with web browsers, snap, or PDF? Discuss Shadow Program & signup procedure in class (normal time, 10:30am) Imaging Modalities mini-lecture; finish PDE active contours Shadow Program — be sure to sign up for the Shadow Program THIS WEEK, beginning at 3:15 pm Sunday (link is here; you may be able to sign up for stations faster if you create an account on signup.com in advance).
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Imaging Modalities Power Point (contains embedded movies) |
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Week 7 |
Tu 2/27 |
Y | Shadow Program starts TODAY--show up on your days at 8 am (with UPMC form!) until you know where you're going Discuss final projects Finish Lecture 11.
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Power Point |
Th 3/1 |
Y | Finish Lecture 12: Level set segmentations & parametric transforms HW3 revised due date 5pm today Segmentation Assignment (ready now) assigned Monday March 5th, due 10pm Wednesday the 21st. SVN accounts have been distributed. If you didn't yet receive your svn account by email, let you instructor know. |
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Pitt Spring Break |
3/6 - 3/8 |
No In-Class Lectures: Instead, there are two lectures below for which you should watch the videos. Due to non-overlapping spring breaks this year, you should expect some type of online/take-home assignment that you can do during the time of your choosing during this 2 weeks. Revised Project proposals will be readily accepted through Thursday night the 30th. |
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CMU Spring Break |
3/13 - 3/15 |
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| S.B. #1 | Lecture SpringBreak1: ITK images & iterators |
Power Point Video (from 2012) |
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| S.B. #2 | Lecture SpringBreak2: ITK pipeline, including reading/writing images and connecting to SimpleITK | Power Point Video (from 2012—link fixed March 14th) |
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Week 8 |
Tu 3/20 |
Y | Special 8:30am group shadow for NeuroPathology: Enter Scaife Hall from the main doors on Terrace street (directly across from the Peterson event center). Take an elevator up to the 7th floor, then go right as you exit the elevator and go through a set of double doors. 10:30am Lecture Cancelled due to illness Segmentation assignment extended until 5pm Wednesday March 28! |
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Th 3/22 |
Y | Finish Parametric Transforms
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Power Point |
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Week 9 |
Tu 3/27 |
Y | Finish Registration (Mutual Information) Lecture 14: Shape Segmentation assignment due 5pm tomorrow.
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Power Point (shape) |
Th 3/29 |
Y | Finish shape (starting with moments) Lecture 15: Summarize Cootes and Taylor ASM (Cootes CVIU 1995) Lecture 16: ITK filters: how to write them (neighborhoods, image boundaries, & numeric traits) note: Project feedback will be given by weekend (Monday night). |
Power Point (public version of ASM) Power Point (ITK Filters) |
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Week 10 |
Tu 4/3 |
Y | Lecture 17 Mathematical morphology & image matching resume ITK filters—boundaries CMU's drop-without-withdrawl period ends today |
Power Point |
Th 4/5 |
Y | Lecture 18 Deformable registration (Insight into Images ch 11) ; may start ITK Filters part 2. Revised project proposals (if needed) due 10am Friday morning |
Power Point Video (from 2012) |
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| Note: CMU's drop-without-withdrawl period ends on March 30th (Monday) | ||||
Week 11 |
Tu 4/10 |
Y | Lecture 19: ITK filters, part 2 (advanced filter creation & useful ITK filters you should know about) Reminder: As discussed in class, neuropathology is part of the "required" shadowing for 2018. Students who were not able to attend should instead submit a short report (1 to 2 pages, same topics as a showdow report) covering your own research into neuropathology.
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Power Point (ITK Filters 2) Video (from 2012) |
Th 4/12 |
Y | Summarize Lecture 20: ITK Paths Presentation order to be assigned over weekend--email (only hard) conflicts today! |
Power Point |
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Week 12 |
Tu 4/17 |
Y | Student project presentations (see random order email) Important: Your presentation should use this directory and name format: |
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Th 4/19 |
No Lecture - CMU Spring Carnival | |||
Week 13 |
Tu 4/24 |
Student project presentations (presentation order) |
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Th 4/26 |
Student project presentations & Projects Due |