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Lecture 1: Introductions, purpose, Syllabus

Lecture 2: Programming background:  C++ & Python
(Do NOT submit HW1 yet, TA still being finalized.)

WARNING: Quiz on book reading next class!

Note: first chapters (ch 1, ch 2) of the text book may be freely accessible by scrolling down on Google's book page.

To prepare for the quiz, I suggest focussing on big-picture concepts and major themes, what algorithms/methods are trying to do, what they are good for, and (if the text goes over it) when/how they typically fail.

Lecture 3: Math & probability background
Begin class with a short QUIZ on Snyder ch. 1-2

Assignment #1 given - due Friday

Lecture 4: ITK background & basic usage
CMU's add/drop-with-refund period ends sometime around now.

Lecture 5: Image characterization
Quiz #2 on Snyder ch. 4 (skip hexagonal coordinates on pp 57-59)

Power Point
Video (from 2012)

Class Cancelled! CMU classes cancelled due to frigid weather.

UPDATE: Assignment #2 is ready now. Please try to do it over this weekend.

Lecture 6: Linear processing
Quiz #3 on Snyder 5.1-5.6,5.8-5A (through page 101, but skip hexagonal coordinates on pp 71-73 and skip 5.7)

Assignment #2 already given last week.

Finish Linear processing (resume Scale Space at slide 15)
Lecture 7: Image relaxation: restoration & feature extraction
Quiz #4 on Snyder ch. 6
HW2 due 11:59pm Monday the 11th.

Lecture 8: ITK registration

Lecture 9: Segmentation, part 1
Quiz #5 (the most in-depth quiz of the class) on Snyder ch. 8 (skip 8.3.2 on pp. 189-196 & 8A.1.1 on pp. 208-209)

Power Point
Video (from 2012)

Lecture 11: Segmentation, part 3 (active contours)

Assignment #3 is now assigned, due 5pm Thursday the 28th.

Follow Up: HW3—easy/helpful? Issues with web browsers, snap, or PDF?

Discuss Shadow Program & signup procedure in class (normal time, 10:30am)

Imaging Modalities mini-lecture; finish registration

Shadow Program — be sure to sign up for the Shadow Program THIS WEEK on Wednesday at 9pm. (link is here; you may be able to sign up for stations faster if you create an account on signup.com in advance).

Shadow Program Power Point

Imaging Modalities Power Point (contains embedded movies)
Video (from 2012, skip to end for imaging modalities)

Shadow Program starts TODAY--show up on your days at 8 am (with UPMC form!) until you know where you're going
How is the shadow program going?

Follow Up: HW3—easy/helpful? MS Edge & PDF? Shadow?

Lecture 12: Level set segmentations & parametric transforms (Snyder 8.5.2 & Snyder 11.1-11.6) [not required, but recommended: Insight into Images ch 8]
Quiz on Snyder 11.1-11.6

Assignment #4 is now assigned, due 5pm Thursday the 7th.

Final Project Power Point

Power Point
Video (from 2012)

Finish Lecture 12: (Level set segmentations &) Parametric Transforms

Discuss final projects
Be sure to email me your initial project idea / tentative proposal by the night of Tuesday the 19th.
Go over example projects.

Lecture: ITK images & iterators

Segmentation Assignment (ready now) assigned now (svn accounts will be emailed by Monday), due Tuesday the 26th. SVN accounts have now been emailed. If you don't receive your emailed svn account yet, let you instructor know.

Lecture 13 Registration in depth (Insight into Images ch 10 + Viola & Wells)

Initial project proposals due tonight.

Power Point
Video (from 2012)

Lecture 14: Shape
Quiz on Snyder ch. 9 (read 9.1-9.8, 9.12-9.14)

Power Point (shape)
Video (from 2012)

Lecture 17 Mathematical morphology & image matching
Quiz on Snyder 7.1-7.5 & 13.1-13.5

Segmentation assignment due midnight tonight.

Lecture 15: Summarize Cootes and Taylor ASM (Cootes CVIU 1995)

Lecture 16: ITK filters: how to write them (neighborhoods, image boundaries, & numeric traits)

note: Project feedback will be given by weekend (Monday night).

Power Point (public version of ASM)

Power Point (ITK Filters)
Video (from 2012)

Lecture 18 Deformable registration (Insight into Images ch 11) ; may start ITK Filters part 2.

resume ITK filters—boundaries

CMU's drop-without-withdrawl period ends today

Power Point
Video (from 2012)

Revised project proposals (if needed) due 10am Friday morning

Lecture 19: ITK filters, part 2 (advanced filter creation & useful ITK filters you should know about)

Reminder: As discussed in class, neuropathology is part of the "required" shadowing for 2018. Students who were not able to attend should instead submit a short report (1 to 2 pages, same topics as a showdow report) covering your own research into neuropathology.

Summarize Lecture 20: ITK Paths
Review Final Project Expectations
Special Help Session for Final Projecrts: after working on your project over the weekend, bring your questions to this special "office hours" help session, same time and place as normal lecture

Presentation order to be assigned over weekend--email (only hard) conflicts today!

Power Point
Video (from 2012)

Student project presentations (see random order email)
(Each presentation must be 7.0-9.0 minutes long.)
Everyone's slides due in svn by 10 AM today! (.pptx format preferred, or else .ppt or .pdf)

Important: Your presentation should use this directory and name format:
MIMIA\{Your_SVN_User_Name}\proj\presentation_{Your_last_name}_{Your_first_name}.pptx

Student project presentations (presentation order)