Instructor |
|
| John Galeotti | galeotti+miia ATcs.cmu.edu |
Teaching Assistants |
|
Weilong Wang |
weilongw+miia ATandrew.cmu.edu |
“Jackie” Chen |
kuanchic+miia ATandrew.cmu.edu |
We comply with both the U. Pitt. and CMU calendars. Lectures are Tuesday and Thursday from 10:30-11:45 AM, in GHC 5222, Carnegie Mellon University.
Shadow Program: 6 radiology sessions and 0-2 (TBD) pathology sessions, 8:30-9:30 AM weekday mornings (and possibly other times optional for shadowing pathology).
Online schedule (same password) and directions. Reports should be emailed to Weilong and Galeotti.
Last Year's Website has been archived.
Pre-release versions of the 2012 lecture videos are available to current students (password required). Be sure to download the videos (right-click the video's link then select either "download" or "save-as") rather than try to watch them in your browser, but please do not distribute these (public versions will be posted in not too long). Please let me know if you notice any problems or video content that should be either fixed or trimmed out if it's not relevant to a general audiance (please reference the 2012 lecture number and the playing time into the video at which the problem occurs).
| Week # | Date | Updated for 2013? | Material | Video and .pptx files |
|---|---|---|---|---|
Week 1 |
Tu 1/15 |
Y | Lecture 1: Introductions, purpose, Syllabus |
Power Point Video (from 2012) |
Th 1/17 |
Y | Lecture 2: Programming background: C++ & Python Pitt's add/drop-with-refund period ends on 18th (tomorrow) |
Power Point Video (from 2012) |
|
Week 2 |
Tu 1/22 |
Y | Lecture 3: Math & probability background |
Power Point Video (from 2012) |
Th 1/24 |
* | Instructor Sick—Class Cancelled CMU's add/drop-with-refund period ends on 25th (tomorrow) |
||
Week 3 |
Tu 1/29 |
Y | Lecture 4: Grading policy (sylabus) Finish Lecture 2 (slide 27—Generic Programming) Finish Lecture 3 (slide 16—Markov models) Imaging Modalities |
Power Point |
Th 1/31 |
Y | Lecture 5: ITK background & basic usage Assignment #2 given |
Power Point Video (from 2012) |
|
Week 4 |
Tu 2/5 |
Y | Lecture 6: Image characterization Quiz #2 on Snyder ch. 4 (skip hexagonal coordinates on pp 57-59 & 71-73) |
Power Point Video (from 2012) |
Th 2/7 |
Y | Lecture 7: Linear processing (finish Lecture 6 first—slide 13) Quiz #3 on Snyder 5.1-5.6,5.8-5A (through page 101, but skip 5.7) Take-home quiz #4 assigned - due in class on 2/14. |
Power Point Video (from 2012) |
|
Week 5 |
Tu 2/12 |
Y | Lecture 8: Image relaxation: restoration & feature extraction |
Power Point Video (from 2012) |
Th 2/14 |
Y | Lecture 9: ITK registration |
Power Point Video (from 2012) |
|
Week 6 |
Tu 2/19 |
Y | Lecture 10: Segmentation, part 1 |
Power Point Video (from 2012) |
Th 2/21 |
Y | Lecture 11: Segmentation, part 2 (continue using lecture 9 notes, start with segmentation methods—slide 9) Shadow Program starts Monday |
Video (from 2012) | |
Week 7 |
Tu 2/26 |
Y | (first continue using lecture 10 notes, start with texture segmentation—slide 21) |
Power Point Video (from 2012) |
Th 2/28 |
Y | (first continue using lecture 12 notes, start with active contours energy minimization—slide 14) Lecture 13: Level set segmentations & (briefly begin) parametric transforms (Snyder 8.5.2 & Snyder 11.1-11.6) [not required, but recommended: Insight into Images ch 8] Quiz on Snyder 11.1-11.6 |
Power Point Video (from 2012) |
|
Week 8 |
Tu 3/5 |
Y | Lecture 14: Shape (& finish level sets—Lecture 13, slide 15) |
Power Point Video (from 2012) |
Th 3/7 |
Y | Lecture 15 Mathematical morphology & image matching Quiz on Snyder 7.1-7.5 & 13.1-13.5 Discuss final projects Be sure to email me your tentative project proposals by the Tuesday night of the 19th Pitt's deadline to submit Monitored Withdrawal forms is 8th (tomorrow) |
Power Point 1 Power Point 2 Video (from 2012) |
|
CMU Spring Break |
3/12 - 3/14 |
No Lectures | ||
Week 9 |
Tu 3/19 |
Y | Lecture 16: ITK images & iterators |
Power Point |
Th 3/21 |
Y | Lecture 17: ITK pipeline, including reading/writing images and connecting to SimpleITK & finish parametric transforms—Lecture 13, slide 20 |
Power Point Video (from 2012) |
|
Week 10 |
Tu 3/26 |
Y |
Lecture 18: ITK filters: how to write them (neighborhoods & numeric traits) SVN accounts distributed sometime today Assignment #3 given: Segmentation and pre-processing |
Power Point Video (from 2012) |
Th 3/28 |
Y | Lecture 19: ITK filters, part 2 (advanced filter creation & misc. tools) CMU's drop-without-withdrawl period ends on April 1st (next Monday) |
Power Point Video (from 2012) |
|
Week 11 |
Tu 4/2 |
Y | Lecture 20: Registration in depth (Insight into Images ch 10 + Viola & Wells) |
Power Point Video (from 2012) |
Th 4/4 |
Y | Lecture 21: Finish mutual information (slide 31) and Deformable registration (& possibly finish Lecture 19 from slide 51—review flood-fill iterators and discuss their pixel inclusion strategies, plus introduce several really useful ITK filters.) |
Power Point |
|
Week 12 |
Tu 4/9 |
Y | Lecture 22: ITK Paths | Power Point Video (from 2012) |
Th 4/11 |
Y | Lecture 23: Summarize Cootes and Taylor ASM (Cootes CVIU 1995) |
Power Point 1 |
|
Week 13 |
Tu 4/16 |
Y | NeuroPathology at UPMC at 10:30 today! Follow emailed directions. | |
Th 4/18 |
No Lecture - CMU Spring Carnival | |||
Week 14 |
Tu 4/23 |
Student project presentations (see random order email) (Each presentation must be between 4.5 - 5.5 minutes long.) Everyone's power-point slides due by 10 AM today! |
||
Th 4/25 |
Student project presentations & Projects Due | |||
Remaining Lecture Fragments: |
Lecture 7 GNC onward (when did I tack this on?), Lecture 14 Image Matching | |||
Potential Lectures: |
||||
| Guest Lecture: MRI/DTI (see also brain anatomy and the fiber track image gallery) | ||||
| Itk Video (w/ OpenCV?) | ||||
| Cootes and Taylor ASM (assuming part of ITKv4) (Cootes CVIU 1995) (based on 2008 guest lecture by Ken Urish) | ||||
Neuropathology Directions have been emailed; Email your instructor now if you did not get them. |
||||