tree tops

Submitted Journal Papers

  • J. Yin, Hypothesis testing for meiotic recombination rates from population SNP data.
  • E. P. Xing, R. Curtis, S. Lee, J. Yin, K. Puniyani, W. Wu, P. Kinnaird, GWAS in a Box: statistical and visual analytics of structured associations via GenAMap.

Refereed Journals and Conference Proceedings

  • J. Yin, Q. Ho and E. P. Xing.
    A scalable approach to probabilistic latent space inference of large-scale networks.
    Advances in Neural Information Processing Systems (NIPS), 2013.
    [abstract] [pdf] [appendix] [code]

  • Q. Ho, J. Yin and E. P. Xing.
    On triangular versus edge representations - towards scalable modeling of networks.
    Advances in Neural Information Processing Systems (NIPS), 2012.
    [abstract] [pdf] [appendix] [code]

  • J. Yin, X. Chen and E. P. Xing.
    Group sparse additive models.
    International Conference on Machine Learning (ICML), 2012.
    [abstract] [pdf] [code]

  • R. Curtis, J. Yin, P. Kinnaird and E. P. Xing.
    Finding genome-transcriptome-phenome association with structured association mapping and visualization in GenAMap.
    Pacific Symposium on Biocomputing (PSB), 2012.
    [abstract] [pdf] [code]

  • J. Yin, M. I. Jordan, Y. S. Song.
    Joint estimation of gene conversion rates and mean conversion tract lengths from population SNP data.
    Bioinformatics, Vol. 25, Iss. 12, i231-i239, 2009.
    [abstract] [pdf] [code]

  • J. Yin, N. Beerenwinkel, J. Rahnenführer, and T. Lengauer.
    Model selection for mixtures of mutagenetic trees.
    Statistical Applications in Genetics and Molecular Biology, Vol. 5, Iss. 1, Article 17, 2006.
    [abstract] [pdf] [code]

Refereed Conference Abstracts

  • J. Yin, M. Marchetti-Bowick, J. Howrylak, E. P. Xing.
    A group sparse additive model for genome-wide association studies of dynamic complex traits.
    The 63rd Annual Meeting of the American Society of Human Genetics (ASHG), 2013.

  • J. Yin.
    Hypothesis testing for estimating meiotic recombination rates from population SNP data.
    The 17th Annual International Conference on Research in Computational Molecular Biology (RECOMB), 2013.

  • J. Yin, R. Curtis and E. P. Xing.
    Finding genome-transcriptome-phenome association with structured association mapping and visualization in GenAMap.
    The 62nd Annual Meeting of the American Society of Human Genetics (ASHG), 2012.

  • E. P. Xing, R. Curtis, S. Lee, S. Shringarpure and J. Yin.
    GenAMap: A visual analytics software platform for eQTL and GWAS analysis.
    The 62nd Annual Meeting of the American Society of Human Genetics (ASHG), 2012.