- TADA
Transmission And De novo Association Test. A statistical framework to combine de novo mutations, inherited variants from parents and standing variants in the population to infer causal genes of human diseases.
- Sherlock
Integrative analysis of expression QTL and GWAS data.
- GEMSTAT
Construct a theromdynamic model of gene expression from a set of DNA sequences, the expression profiles they generate, and a set of transcription factor motifs.
- STAP
Predicting transcription factor and DNA interaction affinity, considering combinatorial interactions of multiple transcription factors. STAP can be applied to analyze ChIP-seq data.
- EMMA
Predict if a sequence is a target of a given set of transcription factor binding motifs, and construct the best alignment of the orthologous sequence pair taking into account the motif information.
- BSQA
BeeSpace Question/Answering system: a text-mining system for bioloical literature of insects.
- Gene List Analyzer
Find the concepts from primary literature that are associated with a given set of genes.
- MCMuSeC
Discover conserved gene clusters (groups of genes that remain spatially close to each other) across multiple genomes.