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Zhou T, Zhang R, Jia D, Doty RT, Munday AD, Gao D, Xin L, Abkowitz JL, Duan Z*, and Ma J*.
Concurrent profiling of multiscale 3D genome organization and gene expression in single mammalian cells
Nature Genetics, accepted in principle;
bioRxiv, doi: https://doi.org/10.1101/2023.07.20.549578
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Xiong K†, Zhang R†, and Ma J.
scGHOST: Identifying single-cell 3D genome subcompartments.
Nature Methods, https://doi.org/10.1038/s41592-024-02230-9, 2024.
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Chidester B†, Zhou T†, Alam S, and Ma J.
SPICEMIX enables integrative single-cell spatial modeling of cell identity.
Nature Genetics, 55(1):78-88, 2023. [Cover Article]
RECOMB, 2021.
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Zhang R†, Zhou T†, and Ma J.
Ultrafast and interpretable single-cell 3D genome analysis with Fast-Higashi.
Cell Systems, 13(10):P798-807.E6, 2022. [Cover Article]
RECOMB, 2022.
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Zhang R, Zhou T, and Ma J.
Multiscale and integrative single-cell Hi-C analysis with Higashi.
Nature Biotechnology, 40:254–261, 2022.