Deconvolution Of Ensemble Chromatin Interaction Data Reveals The Latent Mixing Structures In Cell Subpopulation

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3CDE Code can be found at GitHub

All 3CDE variants are implemented in Python. You need to have the following installed:

  • Python 2.7
  • IBM CPLEX Optimization Software (Free Academic License for full software is available after registration)
  • SDPT3 (Already provided in the code)
  • Matlab (Required by Semidefinite Programming Solver SDPT3)

Follow the instructions on README.md to run the programs properly

3CDE Supplementary Code

  • All Code(including libraries)
  • Our Implementation of Normalization Procude of Tanay 2011
  • Real Data Preprocessing Code
  • Synthetic Data Generator
  • Plot Generator
  • Existing Software for Comparison

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