- Provide the predicted scores on
all possible Yeast pairs ( 6270 * 6270 )
- We set a score threshold t*.
For scores smaller then this threshold, the score was set to zero to make
the file smaller.
- I found that there
was a bug in my old code when generating the full score file. (The
version before 2006 January, Please change to the updated version if you
used this old version data).
- We expanded the features used
in this paper to a larger set and investigated several issues related to
- Y. Qi, Z.
Bar-Joseph, J. Klein-Seetharaman, "Evaluation of different biological
data and computational classification methods for use in protein
interaction prediction", PROTEINS: Structure,
Function, and Bioinformatics. Jan 2006
The updated file
having the “top interaction score protein pairs list” is at:
paper’s supplementary website
two new predicted score results
from the above supplementary website
- one for
physical protein interaction task
- one for
the co-complex interaction task