Process List


Using our process selection algorithm (see main paper), we included 108 biological processes from GO annotations released on 2006-06-01 in our CHPM analysis. These processes are listed below.


         Format : [GO_id] [Process_name] [#genes_annotated]


GO:0000027 ribosomal large subunit assembly and maintenance 37

GO:0030490 processing of 20S pre-rRNA 44

GO:0007121 bipolar bud site selection 32

GO:0030433 ER-associated protein catabolism 32

GO:0006888 ER to Golgi vesicle-mediated transport 76

GO:0030476 spore wall assembly (sensu Fungi) 39

GO:0006365 35S primary transcript processing 73

GO:0007124 pseudohyphal growth 49

GO:0006623 protein targeting to vacuole 61

GO:0000282 bud site selection 41

GO:0000122 negative regulation of transcription from RNA polymerase II promoter 43

GO:0006879 iron ion homeostasis 28

GO:0006406 mRNA export from nucleus 63

GO:0045944 positive regulation of transcription from RNA polymerase II promoter 51

GO:0006364 rRNA processing 74

GO:0006367 transcription initiation from RNA polymerase II promoter 45

GO:0006418 tRNA aminoacylation for protein translation 28

GO:0009060 aerobic respiration 81

GO:0008033 tRNA processing 33

GO:0006289 nucleotide-excision repair 32

GO:0030468 establishment of cell polarity (sensu Fungi) 49

GO:0007052 mitotic spindle organization and biogenesis 45

GO:0030437 sporulation (sensu Fungi) 61

GO:0000070 mitotic sister chromatid segregation 55

GO:0016567 protein ubiquitination 51

GO:0000082 G1/S transition of mitotic cell cycle 34

GO:0000002 mitochondrial genome maintenance 29

GO:0006487 protein amino acid N-linked glycosylation 42

GO:0007046 ribosome biogenesis 63

GO:0007034 vacuolar transport 48

GO:0006402 mRNA catabolism 54

GO:0006626 protein targeting to mitochondrion 48

GO:0000723 telomere maintenance 261

GO:0006400 tRNA modification 33

GO:0006348 chromatin silencing at telomere 47

GO:0007088 regulation of mitosis 48

GO:0006457 protein folding 67

GO:0006511 ubiquitin-dependent protein catabolism 60

GO:0006357 regulation of transcription from RNA polymerase II promoter 101

GO:0045047 protein targeting to ER 29

GO:0006914 autophagy 36

GO:0030384 phosphoinositide metabolism 30

GO:0005977 glycogen metabolism 29

GO:0007005 mitochondrion organization and biogenesis 48

GO:0007033 vacuole organization and biogenesis 40

GO:0006970 response to osmotic stress 59

GO:0006383 transcription from RNA polymerase III promoter 32

GO:0016197 endosome transport 40

GO:0007031 peroxisome organization and biogenesis 36

GO:0006342 chromatin silencing 47

GO:0006486 protein amino acid glycosylation 35

GO:0007131 meiotic recombination 43

GO:0016126 sterol biosynthesis 31

GO:0006906 vesicle fusion 28

GO:0006897 endocytosis 72

GO:0006261 DNA-dependent DNA replication 55

GO:0006366 transcription from RNA polymerase II promoter 80

GO:0000749 response to pheromone during conjugation with cellular fusion 50

GO:0006413 translational initiation 42

GO:0006445 regulation of translation 32

GO:0007015 actin filament organization 54

GO:0016485 protein processing 27

GO:0006461 protein complex assembly 79

GO:0007059 chromosome segregation 49

GO:0000398 nuclear mRNA splicing, via spliceosome 88

GO:0006887 exocytosis 36

GO:0000096 sulfur amino acid metabolism 29

GO:0001302 replicative cell aging 26

GO:0006979 response to oxidative stress 39

GO:0007047 cell wall organization and biogenesis 127

GO:0006644 phospholipid metabolism 49

GO:0000747 conjugation with cellular fusion 43

GO:0006468 protein amino acid phosphorylation 76

GO:0043037 translation 222

GO:0019318 hexose metabolism 39

GO:0000074 regulation of progression through cell cycle 68

GO:0000910 cytokinesis 47

GO:0006338 chromatin remodeling 61

GO:0006355 regulation of transcription, DNA-dependent 50

GO:0007126 meiosis 86

GO:0008652 amino acid biosynthesis 30

GO:0006397 mRNA processing 35

GO:0030036 actin cytoskeleton organization and biogenesis 54

GO:0006351 transcription, DNA-dependent 37

GO:0006302 double-strand break repair 48

GO:0000226 microtubule cytoskeleton organization and biogenesis 33

GO:0006412 protein biosynthesis 60

GO:0006865 amino acid transport 33

GO:0006631 fatty acid metabolism 43

GO:0006886 intracellular protein transport 27

GO:0006464 protein modification 92

GO:0006796 phosphate metabolism 38

GO:0006325 establishment and/or maintenance of chromatin architecture 52

GO:0006350 transcription 48

GO:0006310 DNA recombination 39

GO:0006281 DNA repair 101

GO:0016192 vesicle-mediated transport 47

GO:0007165 signal transduction 72

GO:0006974 response to DNA damage stimulus 29

GO:0007010 cytoskeleton organization and biogenesis 30

GO:0000902 cellular morphogenesis 35

GO:0006873 cell ion homeostasis 36

GO:0042221 response to chemical stimulus 38

GO:0006259 DNA metabolism 52

GO:0006950 response to stress 86

GO:0006810 transport 131

GO:0016070 RNA metabolism 50

GO:0008152 metabolism 27