Process List
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Using our process selection algorithm (see main paper), we included 108 biological processes from GO annotations released on 2006-06-01 in our CHPM analysis. These processes are listed below.
Format : [GO_id] [Process_name] [#genes_annotated]
GO:0000027 ribosomal large subunit assembly and maintenance 37
GO:0030490 processing of 20S pre-rRNA 44
GO:0007121 bipolar bud site selection 32
GO:0030433 ER-associated protein catabolism 32
GO:0006888 ER to Golgi vesicle-mediated transport 76
GO:0030476 spore wall assembly (sensu Fungi) 39
GO:0006365 35S primary transcript processing 73
GO:0007124 pseudohyphal growth 49
GO:0006623 protein targeting to vacuole 61
GO:0000282 bud site selection 41
GO:0000122 negative regulation of transcription from RNA polymerase II promoter 43
GO:0006879 iron ion homeostasis 28
GO:0006406 mRNA export from nucleus 63
GO:0045944 positive regulation of transcription from RNA polymerase II promoter 51
GO:0006364 rRNA processing 74
GO:0006367 transcription initiation from RNA polymerase II promoter 45
GO:0006418 tRNA aminoacylation for protein translation 28
GO:0009060 aerobic respiration 81
GO:0008033 tRNA processing 33
GO:0006289 nucleotide-excision repair 32
GO:0030468 establishment of cell polarity (sensu Fungi) 49
GO:0007052 mitotic spindle organization and biogenesis 45
GO:0030437 sporulation (sensu Fungi) 61
GO:0000070 mitotic sister chromatid segregation 55
GO:0016567 protein ubiquitination 51
GO:0000082 G1/S transition of mitotic cell cycle 34
GO:0000002 mitochondrial genome maintenance 29
GO:0006487 protein amino acid N-linked glycosylation 42
GO:0007046 ribosome biogenesis 63
GO:0007034 vacuolar transport 48
GO:0006402 mRNA catabolism 54
GO:0006626 protein targeting to mitochondrion 48
GO:0000723 telomere maintenance 261
GO:0006400 tRNA modification 33
GO:0006348 chromatin silencing at telomere 47
GO:0007088 regulation of mitosis 48
GO:0006457 protein folding 67
GO:0006511 ubiquitin-dependent protein catabolism 60
GO:0006357 regulation of transcription from RNA polymerase II promoter 101
GO:0045047 protein targeting to ER 29
GO:0006914 autophagy 36
GO:0030384 phosphoinositide metabolism 30
GO:0005977 glycogen metabolism 29
GO:0007005 mitochondrion organization and biogenesis 48
GO:0007033 vacuole organization and biogenesis 40
GO:0006970 response to osmotic stress 59
GO:0006383 transcription from RNA polymerase III promoter 32
GO:0016197 endosome transport 40
GO:0007031 peroxisome organization and biogenesis 36
GO:0006342 chromatin silencing 47
GO:0006486 protein amino acid glycosylation 35
GO:0007131 meiotic recombination 43
GO:0016126 sterol biosynthesis 31
GO:0006906 vesicle fusion 28
GO:0006897 endocytosis 72
GO:0006261 DNA-dependent DNA replication 55
GO:0006366 transcription from RNA polymerase II promoter 80
GO:0000749 response to pheromone during conjugation with cellular fusion 50
GO:0006413 translational initiation 42
GO:0006445 regulation of translation 32
GO:0007015 actin filament organization 54
GO:0016485 protein processing 27
GO:0006461 protein complex assembly 79
GO:0007059 chromosome segregation 49
GO:0000398 nuclear mRNA splicing, via spliceosome 88
GO:0006887 exocytosis 36
GO:0000096 sulfur amino acid metabolism 29
GO:0001302 replicative cell aging 26
GO:0006979 response to oxidative stress 39
GO:0007047 cell wall organization and biogenesis 127
GO:0006644 phospholipid metabolism 49
GO:0000747 conjugation with cellular fusion 43
GO:0006468 protein amino acid phosphorylation 76
GO:0043037 translation 222
GO:0019318 hexose metabolism 39
GO:0000074 regulation of progression through cell cycle 68
GO:0000910 cytokinesis 47
GO:0006338 chromatin remodeling 61
GO:0006355 regulation of transcription, DNA-dependent 50
GO:0007126 meiosis 86
GO:0008652 amino acid biosynthesis 30
GO:0006397 mRNA processing 35
GO:0030036 actin cytoskeleton organization and biogenesis 54
GO:0006351 transcription, DNA-dependent 37
GO:0006302 double-strand break repair 48
GO:0000226 microtubule cytoskeleton organization and biogenesis 33
GO:0006412 protein biosynthesis 60
GO:0006865 amino acid transport 33
GO:0006631 fatty acid metabolism 43
GO:0006886 intracellular protein transport 27
GO:0006464 protein modification 92
GO:0006796 phosphate metabolism 38
GO:0006325 establishment and/or maintenance of chromatin architecture 52
GO:0006350 transcription 48
GO:0006310 DNA recombination 39
GO:0006281 DNA repair 101
GO:0016192 vesicle-mediated transport 47
GO:0007165 signal transduction 72
GO:0006974 response to DNA damage stimulus 29
GO:0007010 cytoskeleton organization and biogenesis 30
GO:0000902 cellular morphogenesis 35
GO:0006873 cell ion homeostasis 36
GO:0042221 response to chemical stimulus 38
GO:0006259 DNA metabolism 52
GO:0006950 response to stress 86
GO:0006810 transport 131
GO:0016070 RNA metabolism 50
GO:0008152 metabolism 27