Table of parameters used in simulation and ODEs
|
Parameter |
Description |
|
A1 |
Monomer or assembly with one subunit |
|
A0
|
Monomer without binding capacity |
|
Aj |
Assembly consisting of j subunits |
|
[Aj] |
The concentration of an assembly with j
subunits |
|
N |
The initial amount of monomers |
|
L |
The maximum number of subunits allowed in
any filament |
|
Ta |
The average waiting time that two binding
sites associate to form a bond. It is equal to ka
in kinetics equations. |
|
Td |
The average waiting time that two binding
sites disassociate to break a bond. It is equal to kd in kinetics equations. |
|
T+ |
The average waiting time for a monomer to
obtain the binding capacity. It is equal to k+
in kinetics equations. |
|
T- |
The average waiting time for a monomer to
lose the binding capacity. It is equal to k-
in kinetics equations. |
Reaction equations:
ODEs based on reaction equations:
