Class SubunitType

java.lang.Object
  SubunitType

public class SubunitType

extends java.lang.Object

a SubunitType is a class of Subunits with common Conformations, Domains and BindingSites

Constructor Summary

SubunitType()
Constructs SubunitType with default parameters

SubunitType(java.util.Vector ds, java.lang.String n, Solution s, double m, double r)
Constructs SubunitType with specified parameters,

Method Summary

java.util.Vector	getConfsAtDomain(int d) Returns vector of possible conformations of Domain with id d
java.util.Vector	getConfSets() Returns Vector of Vectors of all Conformations for this SubunitType
double	getMass() Returns this SubunitType's mass
java.lang.String	getName() Gets the name of this SubunitType
double	getRadius() Returns this SubunitType's radius
boolean	isConf(Conformation c, int di) Returns true if Conformation c is a possible conformation of Domain di, false if not
boolean	isEqual(SubunitType s) Returns if s is the same as this SubunitType
java.lang.String	toString() Returns a String version of this SubunitType

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

SubunitType

public SubunitType()

Constructs SubunitType with default parameters

SubunitType

public SubunitType(java.util.Vector ds,
                   java.lang.String n,
                   Solution s,
                   double m,
                   double r)

Constructs SubunitType with specified parameters,

Parameters:

ds - Vector which includes Domain information of this SubunitType

n - String the name of this SubunitType

s - Soltion

m - double mass of this SubunitType

r - double radius of this SubunitType

Method Detail

getConfSets

public java.util.Vector getConfSets()

Returns Vector of Vectors of all Conformations for this SubunitType

Returns:

Vector

getConfsAtDomain

public java.util.Vector getConfsAtDomain(int d)

Returns vector of possible conformations of Domain with id d

Parameters:

d - int Domain id

Returns:

Vector of Conformation

getMass

public double getMass()

Returns this SubunitType's mass

Returns:

double

getRadius

public double getRadius()

Returns this SubunitType's radius

Returns:

double

toString

public java.lang.String toString()

Returns a String version of this SubunitType

Returns:

String

isConf

public boolean isConf(Conformation c,
                      int di)

Returns true if Conformation c is a possible conformation of Domain di, false if not

Returns:

boolean

getName

public java.lang.String getName()

Gets the name of this SubunitType

Returns:

String

isEqual

public boolean isEqual(SubunitType s)

Returns if s is the same as this SubunitType

Parameters:

s - SubunitType

Returns:

boolean