Class Domain

java.lang.Object
  Domain

public class Domain

extends java.lang.Object

Domain class holds Conformation information for a Domain in a Subunit

Constructor Summary

Domain(java.lang.String stname, java.util.Vector c, javax.vecmath.Vector3d pos, int di)
Constructs a Domain with specified parameters (SubunitType ID, Vector of Conformations, Vector of Positions, Domain id)

Domain(java.lang.String stname, java.util.Vector c, javax.vecmath.Vector3d pos, int di, Conformation cc)
Constructs a Domain with specified parameters (SubunitType ID, Vector of Conformations, Vector of Positions, Domain id, current Conformation)

Method Summary

boolean	changeConf(Conformation newconf) Changes this Domain's current Conformation to newconf, returns true on success, false on failure
java.util.HashMap	getConfMaps()
java.util.Vector	getConfs() Returns vector of Conformations for this Domain
Conformation	getCurConf() Returns the current Conformation for this Domain
int	getDomainId()
javax.vecmath.Vector3d	getPos() Returns the position of this Domain in the Subunit
java.lang.String	toString() Returns a String version of this Domain

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

Domain

public Domain(java.lang.String stname,
              java.util.Vector c,
              javax.vecmath.Vector3d pos,
              int di)

Constructs a Domain with specified parameters (SubunitType ID, Vector of Conformations, Vector of Positions, Domain id)

Parameters:

stname - String, the name of the SubunitType associated with this Domain

c - Vector of Conformations

pos - Vector3D postion of this Domain in the Subunit

di - Domain id

Domain

public Domain(java.lang.String stname,
              java.util.Vector c,
              javax.vecmath.Vector3d pos,
              int di,
              Conformation cc)

Constructs a Domain with specified parameters (SubunitType ID, Vector of Conformations, Vector of Positions, Domain id, current Conformation)

Parameters:

stname - String, the name of the SubunitType associated with this Domain

c - Vector of Conformations

pos - Vector3D postion of this Domain in the Subunit

di - Domain id

cc - Conformation, current Conformation for this Domain

Method Detail

getConfMaps

public java.util.HashMap getConfMaps()

getConfs

public java.util.Vector getConfs()

Returns vector of Conformations for this Domain

Returns:

Vector of Conformations

getPos

public javax.vecmath.Vector3d getPos()

Returns the position of this Domain in the Subunit

Returns:

Vector3d

changeConf

public boolean changeConf(Conformation newconf)

Changes this Domain's current Conformation to newconf, returns true on success, false on failure

Parameters:

newconf - changing this Domain's current Conformation to newconf

Returns:

boolean

getCurConf

public Conformation getCurConf()

Returns the current Conformation for this Domain

Returns:

Conformation

getDomainId

public int getDomainId()

toString

public java.lang.String toString()

Returns a String version of this Domain

Returns:

String