Class Conformation

java.lang.Object
  Conformation

public class Conformation

extends java.lang.Object

Conformation holds information about a particular conformation Domain of a Subunit (energy, SubunitType, Domain, BindingSites present in this Conformation)

Constructor Summary

Conformation()
Constructs a default conformation

Conformation(java.util.Vector bs, double e, java.lang.String n)
Constructs a Conformation with specified BindingSite Vector bs, energy e, and name.

Method Summary

boolean	bound() Checks if any BindingSite in this Conformation is bound, if so, returns true
java.util.Vector	getBindSites() Returns the bindingsites present in this conformation
int	getDomainID() Returns the ID of this Conformation's Domain
double	getE() Returns of energy of this Conformation
java.lang.String	getName() Returns the name of this Conformation
java.util.Vector	getSites() Returns Vector of BindingSites present in this Conformation
boolean	hasBS(BindingSite bs) Returns true if this Conformation contains the BindingSite bs
boolean	isEqual(Conformation c) Returns true if c is equal to this
void	setSubunitType(java.lang.String stname, int did) Sets the name of SubunitType in this Conformation to stname, sets the ID of Domain of this Conformation to did
java.lang.String	toString() Returns a String version of this Conformation

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

Conformation

public Conformation()

Constructs a default conformation

Conformation

public Conformation(java.util.Vector bs,
                    double e,
                    java.lang.String n)

Constructs a Conformation with specified BindingSite Vector bs, energy e, and name. Sets the ID of SubunitTypeID and DomainID associated to -1.

Parameters:

bs - Vector of BindingSite

e - double energy

n - String name of this Conformation

Method Detail

getBindSites

public java.util.Vector getBindSites()

Returns the bindingsites present in this conformation

Returns:

Vector

bound

public boolean bound()

Checks if any BindingSite in this Conformation is bound, if so, returns true

Returns:

boolean

hasBS

public boolean hasBS(BindingSite bs)

Returns true if this Conformation contains the BindingSite bs

Parameters:

bs - BindingSite to be checked

Returns:

boolean

setSubunitType

public void setSubunitType(java.lang.String stname,
                           int did)

Sets the name of SubunitType in this Conformation to stname, sets the ID of Domain of this Conformation to did

Parameters:

stname - String stname

did - int Domain ID

getName

public java.lang.String getName()

Returns the name of this Conformation

Returns:

String

getDomainID

public int getDomainID()

Returns the ID of this Conformation's Domain

Returns:

int

getE

public double getE()

Returns of energy of this Conformation

Returns:

double

getSites

public java.util.Vector getSites()

Returns Vector of BindingSites present in this Conformation

Returns:

Vector

isEqual

public boolean isEqual(Conformation c)

Returns true if c is equal to this

Returns:

boolean

toString

public java.lang.String toString()

Returns a String version of this Conformation

Returns:

String