Attribute Importance Ranking List |
For each of the 15 attributes we have used, we have counted the percentage of the top four nodes (in all the random forest trees) that use this attribute. These are summarized in the table below. (The first column contains the position index of the attribute within our feature set.)
Table S3. Attribute Importance
Attribute No. |
Dataset |
Importance ranking (Counting Way, n=4) |
3 |
Gene Expression |
0.1868 |
15 |
Protein Expression |
0.1302 |
2 |
Domain-Domain Interaction |
0.1154 |
5 |
GO Biological Process |
0.1053 |
8 |
TAP Mass |
0.0800 |
13 |
Synthetic Lethal |
0.0739 |
6 |
GO Cellular Component |
0.0570 |
4 |
GO Molecular Function |
0.0519 |
7 |
Y2H |
0.0427 |
9 |
HMS_PCI Mass |
0.0425 |
14 |
Syn-expression |
0.0385 |
12 |
Gene Co-occur |
0.0317 |
10 |
Gene Neighborhood |
0.0211 |
1 |
Protein-DNA Binding |
0.0178 |
11 |
Gene Fusion |
0.0052 |