Performance Comparison with Only Top 20 detail features

 

 

 

 

 

 


 

1. Co-Complex Protein Pair Prediction Summary

 

 

 

 

 

Feature Index

Description

Note:

The RF-Imp + Top 20 Feature Ranked list

1

3

Sporulation

Gene exp

0.0059 61

0.0061 85

0.0068 100

0.0070 105

0.0090 14

0.0095 23

0.0100 48

0.0139 20

0.0228 4

0.0241 3

0.0385 9

0.0430 5

0.0441 13

0.0569 16

0.0715 8

0.0731 101

0.0778 19

0.0965 39

0.1182 76

0.1637 49

2

4

fermentation to respiration / cell wall

Gene exp

3

5

Eisen1998 stress

Gene exp

4

8

Jelinsky2000 alkylating agents

Gene exp

5

9

Lyons2000 zinc

Gene exp

6

13

Shamji2000

Gene exp

7

14

Travers2000

Gene exp

8

16

Gasch2001

Gene exp

9

19

Gasch2000 stress

Gene exp

10

20

cell cycles

Gene exp

11

23

transcription regulator activity

Go Func

12

39

structural molecule activity

Go Func

13

48

protein catabolism

Go Proc

14

49

protein biosynthesis

Go Proc

15

61

Transcription

Go Proc

16

76

Ribosome

Go Comp

17

85

mitochondrial membrane

Go Comp

18

100

HMS_PCI Mass

 

19

101

 TAP Mass

 

20

105

 Sequence Similarity

 

 

 

 

 


 

2. Direct Protein-Protein Interaction Prediction Summary

 

 

 

Feature Index

Description

Note:

The RF-Imp + Top 20 Feature Ranked list

1

3

sporulation

Gen Exp

0.0130 109

0.0140 162

0.0140 30

0.0141 74

0.0153 48

0.0171 23

0.0172 61

0.0189 157

0.0200 3

0.0209 103

0.0234 20

0.0261 83

0.0267 8

0.0306 105

0.0336 5

0.0352 110

0.0372 67

0.0459 100

0.0611 102

0.1035 101

2

5

Eisen1998 stress

Gen Exp

3

8

Jelinsky2000 alkylating agents

Gen Exp

4

20

cell cycle ( 76 col )

Gen Exp

5

23

transcription regulator activity

Go Func

6

30

RNA binding

Go Func

7

48

protein catabolism

Go Proc

8

61

transcription

Go Proc

9

67

nucleus

Go Proc

10

74

Golgi apparatus

Go Proc

11

83

vesicle-mediated transport

Go Comp

12

100

HMS_PCI Mass

HMS_PCI Mass

13

101

TAP Mass

TAP Mass

14

102

Y2H

Y2H

15

103

Synthetic Lethal

Synthetic Lethal

16

105

Celegan homology PPI

 Sequence Similarity

17

109

celegan

Homology

18

110

Domain-Domain Interaction

Domain-Domain Interaction

19

157

Cell cycle defects

MIPS protein phenotype

20

162

Nucleic acid metabolism defects

MIPS protein phenotype

 

 

 


 

3. Co-pathway Protein Pair Prediction Summary

 

 

 

 

Feature Index

Description

Note:

The RF-Imp + Top 20 Feature Ranked list

1

3

sporulation

Gen Exp

0.0118 41

0.0127 98

0.0142 24

0.0142 28

0.0147 14

0.0170 20

0.0204 3

0.0207 104

0.0254 13

0.0255 4

0.0310 157

0.0356 51

0.0474 9

0.0511 39

0.0571 8

0.0584 16

0.0726 19

0.0729 5

0.0757 76

0.0867 49

2

4

fermentation to respiration / cell wall

Gen Exp

3

5

Eisen1998 stress

Gen Exp

4

8

Jelinsky2000 alkylating agents

Gen Exp

5

9

Lyons2000 zinc

Gen Exp

6

13

Shamji2000

Gen Exp

7

14

Travers2000

Gen Exp

8

16

Gasch2001

Gen Exp

9

19

Gasch2000 stress

Gen Exp

10

20

cell cycle

Gen Exp

11

24

transferase activity

Go Func

12

28

oxidoreductase activity

Go Func

13

39

structural molecule activity

Go Func

14

41

nucleotidyltransferase activity

Go Func

15

49

protein biosynthesis

Go Proc

16

51

carbohydrate metabolism

Go Proc

17

76

ribosome

Go Comp

18

98

Prot Exp

Prot Exp

19

104

Gene Neigh/Fusion/Cocur

Gene Neigh/Fusion/Cocur

20

157

Cell cycle defects

MIPS phenotype