pradipta ray


I have moved in a post doctoral capacity to the University of Texas Center for Systems Biology, working on genomic and epigenomic analysis. My new webpage is here. This page will no longer be updated.

NB : First authors (including co-first authors) are indicated in bold.

Ray, P.; Song, L; and Xing, E. P.; Admixture of Dictionaries Analysis of the Regulatory Genome Suggests Strong Multi-Functional Basis of Sequence Word Distributions [in review]
See initial work @ Recomb Sat 09 here
Paper | Presentation | Project URL | Publication URL | Bibtex (show/hide)
Ray, P.; Song, L; and Xing, E. P.; Discriminating functionality by kernel clustering k-mers in the regulatory genome; RECOMB Regulatory Genomics Satellite 2009, Boston, December 2009 [abstract published]
See latest work in review here
Abstract | Presentation | Project URL | Publication URL | Bibtex (show/hide)
Fu, W.; Ray, P.; and Xing, E. P.; DISCOVER: A feature-based discriminative method for motif search in complex genomes; Proceedings of the 16th International Conference on Intelligent Systems for Molecular Biology (ISMB 2009)
Paper (supplement) | Presentation (talk) | Project URL | Publication URL (Pubmed) | Bibtex (show/hide)
Ray, P.; and Xing, E. P.; Analysis of Co-evolution in Drosophila regulatory genome ; RECOMB Regulatory Genomics Satellite 2008, Boston, October 2008 [abstract published]
Abstract | Presentation | Project URL | Publication URL | Bibtex (show/hide)
Ray, P., Shringarpure, S., Kolar, M. and Xing, E. P., CSMET: Comparative Genomic Motif Detection via Multi-Resolution Phylogenetic Shadowing, PLoS Computational Biology (2008), Vol 4 (6), June 2008
See initial work @ Recomb Sat 07 here
Paper (supplement) | Presentation | Project URL | Publication URL (Pubmed) | Bibtex (show/hide)
Lin, T.; Ray, P.; Sandve, G. K.; Uguroglu, S.; and Xing, E. P.; BayCis: a Bayesian hierarchical HMM for cis-regulatory module decoding in metazoan genomes; Proceedings of the Twelfth Annual International Conference on Research in Computational Molecular Biology (RECOMB2008)
Paper (supplement) | Presentation | Project URL | Publication URL | Bibtex (show/hide)
Xing, E. P.; and Ray, P.; CSMET: Comparative Genomic Motif Detection (abstract only); RECOMB Regulatory Genomics Satellite, Boston 2007 [abstract published]
See journal paper @ PLoS Compbio 08 here
Abstract | Presentation | Project URL | Publication URL | Bibtex (show/hide)

Pre-2005 publications:

Bansal, B.; Choudhury, M.; Ray, P.; Basu, A.; and Sarkar, S.; Isolated-word Error Correction for Partially Phonemic Languages using Phonetic Cues; Proceedings of the 5th International Conference on Knowledge Based Computing Systems (KBCS-2004); Hyderabad, Dec 2004
Paper | Presentation | Project URL | Publication URL | Bibtex (show/hide)
Choudhury, M.; and Ray, P.; In Search of Musicality: Can Fractals Show Us The Way?; Proceedings of the 1st World Congress on Lateral Computing (WCLC-2004); Bangalore, Dec 2004.
Winner of the best paper award
Paper | Presentation | Project URL | Publication URL | Bibtex (show/hide)
Choudhury, M.; and Ray, P.R.; Measuring Similarites Across Musical Compositions:An Approach Based on the Raga Paradigm; Journal of the Sangeet Research Academy, Volume 17, 2003.
Paper | Presentation | Project URL | Publication URL | Bibtex (show/hide)
Ray, P.; Harish V.; Sarkar, S.; and Basu, A.; Part of Speech Tagging and Local Word Grouping Techniques for Natural Language Parsing in Hindi; Proceedings of the 1st International Conference on Natural Language Processing (ICON 2003), Mysore, 2003.
Paper | Presentation | Project URL | Publication URL | Bibtex (show/hide)
Copyright of published papers held by publishing bodies in question