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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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(  298 1b66_A)  (   77 1a8r_A)     0.7499   0.4615   3.2044 (   0   10   15)   0     0.7499   0.4615    8  13
(  298 1b66_A)  (  298 1b66_A)     1.0000   1.0000   0.0000 (   0   22   28)   0     1.0000   1.0000    8   8
(  298 1b66_A)  (  327 1b9l_A)     0.7499   0.7499   3.4202 (   0    8   15)   0     0.7499   0.7499    8   8
(  298 1b66_A)  (  841 1dhn  )     0.7498   0.7498   3.8189 (   0    8   15)   0     0.7498   0.7498    8   8
(  298 1b66_A)  ( 2593 1is8_A)     0.7498   0.5000   3.8979 (   0    8   15)   0     0.7498   0.5000    8  12
(  298 1b66_A)  ( 4190 1nbu_A)     0.7498   0.7498   4.0268 (   0   10   15)   0     0.7498   0.7498    8   8
(  298 1b66_A)  ( 5554 1r51_A)     0.7497   0.6665   4.3592 (   0    9   15)   0     0.7497   0.6665    8   9
(  298 1b66_A)  ( 5555 1r51_A)     0.7498   0.6666   3.7850 (   0   10   15)   0     0.7498   0.6666    8   9

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