------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 6513 2pld_A) ( 748 1d4t_A) 0.8331 0.8331 3.4574 ( 0 4 10) 0 0.8331 0.8331 6 6 ( 6513 2pld_A) ( 2381 1i3z_A) 0.8332 0.8332 2.9432 ( 0 4 10) 0 0.8332 0.8332 6 6 ( 6513 2pld_A) ( 3064 1ju5_A) 0.8331 0.7142 3.6359 ( 0 4 10) 0 0.8331 0.7142 6 7 ( 6513 2pld_A) ( 3230 1k9a_A) 0.8332 0.8332 2.9884 ( 0 4 10) 0 0.8332 0.8332 6 6 ( 6513 2pld_A) ( 3850 1m61_A) 0.8330 0.7141 3.8590 ( 0 4 10) 0 0.8330 0.7141 6 7 ( 6513 2pld_A) ( 3851 1m61_A) 0.8329 0.7141 4.0397 ( 0 4 10) 0 0.8329 0.7141 6 7 ( 6513 2pld_A) ( 3935 1mil ) 0.8330 0.7142 3.6994 ( 0 3 10) 0 0.8330 0.7142 6 7 ( 6513 2pld_A) ( 5265 1qad_A) 0.8331 0.7142 3.6182 ( 0 4 10) 0 0.8331 0.7142 6 7 ( 6513 2pld_A) ( 5688 1rpy_A) 0.6663 0.6663 5.3276 ( 0 2 6) 0 0.6663 0.6663 6 6 ( 6513 2pld_A) ( 6120 1uur_A) 0.8331 0.5555 3.3153 ( 0 4 10) 0 0.8331 0.5555 6 9 ( 6513 2pld_A) ( 6513 2pld_A) 1.0000 1.0000 0.0000 ( 0 7 15) 0 1.0000 1.0000 6 6 -------------------------------------------------------------------------------------------------------------------------