------------------------------------------------------------------------------------------------------------------------- Will print the top 5 alignments (based on backbone shifts) for each pairing of chains, as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: score1 [score2] pairings L2ERR {Xbad/Xsig:Xtot} Breaks (score2 is the score from protein2's perspective, not the minimum of the two perspectives as in some earlier printouts.) Recall that "SIMILARITY" refers to similarities over all alignments not just the top ones. ------------------------------------------------------------------------------------------------------------------------- [885, 416]: Comparing 1dmt_A and 1bkc_A, based on their crossing files. There are 48 (37 H + 11 S) secondary structure elements in 1dmt_A, of which 41 satisfy the size requirements. There are 19 (9 H + 10 S) secondary structure elements in 1bkc_A, of which 14 satisfy the size requirements. 6.83334 [ 2.33346] ((27 . 2) (28 . 3) (30 . 8) (34 . 10) (35 . 13) (37 . 16)) 4.529 {0/9:15} B:0 8.20003 [ 2.80079] ((27 . 2) (28 . 3) (33 . 6) (34 . 10) (37 . 16)) 8.220 {0/8:10} B:0 8.20111 [ 2.82754] ((27 . 2) (28 . 3) (30 . 5) (34 . 10) (37 . 16)) 5.389 {1/8:10} B:0 10.25001 [ 3.50020] ((9 . 2) (10 . 3) (15 . 6) (26 . 19)) 6.917 {0/5:6} B:0 10.25004 [ 3.50092] ((27 . 2) (28 . 3) (35 . 12) (37 . 16)) 10.098 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.1730 [and 1/min{score2}: 0.4285] [885, 537]: Comparing 1dmt_A and 1c7k_A, based on their crossing files. There are 48 (37 H + 11 S) secondary structure elements in 1dmt_A, of which 41 satisfy the size requirements. There are 10 (5 H + 5 S) secondary structure elements in 1c7k_A, of which 9 satisfy the size requirements. 8.20000 [ 1.80003] ((28 . 2) (30 . 4) (34 . 5) (35 . 6) (37 . 8)) 2.491 {0/6:10} B:0 10.25000 [ 2.25014] ((30 . 1) (34 . 5) (35 . 6) (37 . 8)) 4.515 {0/2:6} B:0 10.30899 [ 4.09762] ((35 . 1) (37 . 2) (43 . 8) (44 . 10)) 11.758 {2/5:6} B:0 10.39217 [ 5.05101] ((9 . 2) (11 . 5) (12 . 6) (15 . 10)) 11.518 {1/2:6} B:0 10.39233 [ 5.05240] ((2 . 2) (3 . 3) (5 . 7) (10 . 10)) 15.946 {2/4:6} B:0 SIMILARITY (1/min{score1}): 0.1374 [and 1/min{score2}: 0.5555] [885, 885]: Comparing 1dmt_A and 1dmt_A, based on their crossing files. There are 48 (37 H + 11 S) secondary structure elements in 1dmt_A, of which 41 satisfy the size requirements. There are 48 (37 H + 11 S) secondary structure elements in 1dmt_A, of which 41 satisfy the size requirements. 1.00000 [ 1.00000] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7) (9 . 9) (10 . 10) (11 . 11) (12 . 12) (13 . 13) (14 . 14) (15 . 15) (18 . 18) (19 . 19) (20 . 20) (21 . 21) (22 . 22) (23 . 23) (24 . 24) (25 . 25) (26 . 26) (27 . 27) (28 . 28) (29 . 29) (30 . 30) (31 . 31) (32 . 32) (33 . 33) (34 . 34) (35 . 35) (37 . 37) (39 . 39) (41 . 41) (43 . 43) (44 . 44) (45 . 45) (46 . 46) (47 . 47) (48 . 48)) 0.000 {0/729:820} B:0 1.06235 [ 1.06235] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7) (9 . 9) (10 . 10) (11 . 11) (12 . 12) (13 . 13) (14 . 14) (15 . 15) (19 . 20) (21 . 21) (22 . 22) (23 . 23) (24 . 24) (25 . 25) (26 . 26) (27 . 27) (28 . 28) (29 . 29) (30 . 30) (31 . 31) (32 . 32) (33 . 33) (34 . 34) (35 . 35) (37 . 37) (39 . 39) (41 . 41) (43 . 43) (44 . 44) (45 . 45) (46 . 46) (47 . 47) (48 . 48)) 2.419 {31/650:741} B:0 1.06235 [ 1.06235] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7) (9 . 9) (10 . 10) (11 . 11) (12 . 12) (13 . 13) (14 . 14) (15 . 15) (20 . 19) (21 . 21) (22 . 22) (23 . 23) (24 . 24) (25 . 25) (26 . 26) (27 . 27) (28 . 28) (29 . 29) (30 . 30) (31 . 31) (32 . 32) (33 . 33) (34 . 34) (35 . 35) (37 . 37) (39 . 39) (41 . 41) (43 . 43) (44 . 44) (45 . 45) (46 . 46) (47 . 47) (48 . 48)) 2.419 {31/650:741} B:0 2.79499 [ 2.79499] ((1 . 1) (2 . 2) (3 . 3) (7 . 6) (14 . 14) (15 . 15) (19 . 20) (22 . 10) (23 . 23) (25 . 25) (26 . 4) (27 . 27) (28 . 28) (32 . 32) (33 . 5) (35 . 30) (43 . 43) (44 . 44) (45 . 45) (46 . 46)) 6.420 {39/152:190} B:3 2.79499 [ 2.79499] ((1 . 1) (2 . 2) (3 . 3) (4 . 26) (5 . 33) (6 . 7) (10 . 22) (14 . 14) (15 . 15) (20 . 19) (23 . 23) (25 . 25) (27 . 27) (28 . 28) (30 . 35) (32 . 32) (43 . 43) (44 . 44) (45 . 45) (46 . 46)) 6.420 {39/152:190} B:3 SIMILARITY (1/min{score1}): 1.0000 [and 1/min{score2}: 1.0000] [885, 1091]: Comparing 1dmt_A and 1eb6_A, based on their crossing files. There are 48 (37 H + 11 S) secondary structure elements in 1dmt_A, of which 41 satisfy the size requirements. There are 13 (9 H + 4 S) secondary structure elements in 1eb6_A, of which 12 satisfy the size requirements. 8.20011 [ 2.40440] ((35 . 1) (37 . 2) (43 . 9) (44 . 10) (47 . 13)) 11.244 {0/7:10} B:0 9.83177 [ 8.34769] ((26 . 4) (30 . 5) (35 . 8) (37 . 9) (46 . 11)) 9.688 {5/6:10} B:0 10.25001 [ 3.00038] ((37 . 4) (39 . 9) (43 . 10) (44 . 13)) 7.220 {0/4:6} B:0 10.25005 [ 3.00196] ((7 . 2) (9 . 3) (10 . 4) (11 . 5)) 10.861 {0/5:6} B:0 10.25009 [ 3.00370] ((14 . 4) (19 . 9) (20 . 10) (22 . 12)) 12.725 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.2436 [and 1/min{score2}: 0.7234] [885, 1238]: Comparing 1dmt_A and 1epw_A, based on their crossing files. There are 48 (37 H + 11 S) secondary structure elements in 1dmt_A, of which 41 satisfy the size requirements. There are 103 (40 H + 63 S) secondary structure elements in 1epw_A, of which 26 satisfy the size requirements. 6.39019 [ 5.10819] ((11 . 4) (19 . 8) (26 . 22) (27 . 23) (28 . 24) (29 . 26) (33 . 30)) 9.647 {8/17:21} B:0 6.79331 [ 5.81469] ((4 . 30) (5 . 8) (11 . 11) (12 . 12) (26 . 21) (28 . 24) (32 . 44)) 11.059 {10/18:21} B:1 6.92817 [ 4.67138] ((9 . 9) (10 . 29) (14 . 44) (20 . 21) (22 . 30) (35 . 43)) 9.619 {5/15:15} B:1 7.14579 [ 5.28405] ((10 . 9) (13 . 23) (14 . 24) (23 . 29) (27 . 8) (46 . 22)) 9.120 {5/11:15} B:1 7.41389 [ 5.87763] ((6 . 9) (7 . 21) (9 . 33) (11 . 38) (12 . 39) (25 . 24)) 10.738 {7/13:15} B:1 SIMILARITY (1/min{score1}): 0.2198 [and 1/min{score2}: 0.2813] [885, 1326]: Comparing 1dmt_A and 1ezm, based on their crossing files. There are 48 (37 H + 11 S) secondary structure elements in 1dmt_A, of which 41 satisfy the size requirements. There are 19 (9 H + 10 S) secondary structure elements in 1ezm, of which 13 satisfy the size requirements. 5.19609 [ 2.60505] ((28 . 6) (30 . 7) (34 . 8) (35 . 9) (37 . 10) (43 . 11) (47 . 16) (48 . 17)) 5.909 {5/20:28} B:0 6.32946 [ 5.51048] ((28 . 6) (30 . 7) (34 . 8) (35 . 9) (37 . 10) (43 . 11) (44 . 16) (48 . 17)) 6.027 {11/20:28} B:0 8.20002 [ 2.60052] ((30 . 5) (34 . 8) (35 . 9) (37 . 10) (43 . 16)) 7.007 {0/6:10} B:0 10.25001 [ 3.25033] ((30 . 5) (35 . 7) (37 . 10) (47 . 18)) 7.374 {0/5:6} B:0 10.25002 [ 3.25076] ((28 . 6) (30 . 7) (43 . 18) (44 . 19)) 9.097 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.2076 [and 1/min{score2}: 0.4026] [885, 1686]: Comparing 1dmt_A and 1g12_A, based on their crossing files. There are 48 (37 H + 11 S) secondary structure elements in 1dmt_A, of which 41 satisfy the size requirements. There are 14 (10 H + 4 S) secondary structure elements in 1g12_A, of which 10 satisfy the size requirements. 8.20073 [ 2.04849] ((37 . 2) (39 . 3) (43 . 4) (44 . 10) (47 . 14)) 8.634 {1/9:10} B:0 10.25002 [ 2.50111] ((37 . 2) (39 . 3) (44 . 10) (47 . 12)) 8.217 {0/5:6} B:0 10.25010 [ 2.50666] ((23 . 2) (24 . 3) (26 . 4) (33 . 14)) 12.866 {0/4:6} B:0 10.25013 [ 2.50899] ((39 . 4) (41 . 9) (43 . 10) (44 . 14)) 13.870 {0/5:6} B:0 10.25026 [ 2.51763] ((23 . 2) (24 . 3) (26 . 4) (28 . 9)) 16.436 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.1665 [and 1/min{score2}: 0.4882] [885, 1915]: Comparing 1dmt_A and 1gqi_A, based on their crossing files. There are 48 (37 H + 11 S) secondary structure elements in 1dmt_A, of which 41 satisfy the size requirements. There are 46 (30 H + 16 S) secondary structure elements in 1gqi_A, of which 10 satisfy the size requirements. 10.25000 [ 2.50018] ((30 . 2) (34 . 8) (35 . 9) (37 . 10)) 5.238 {0/2:6} B:0 10.25003 [ 2.50226] ((28 . 1) (29 . 3) (33 . 7) (34 . 9)) 9.810 {0/5:6} B:0 10.25005 [ 2.50373] ((43 . 1) (45 . 5) (46 . 6) (47 . 7)) 11.126 {0/5:6} B:0 10.25017 [ 2.51188] ((37 . 1) (39 . 3) (43 . 6) (46 . 10)) 14.878 {0/5:6} B:0 10.25185 [ 2.61857] ((3 . 5) (4 . 6) (5 . 7) (7 . 10)) 11.186 {1/6:6} B:0 SIMILARITY (1/min{score1}): 0.1697 [and 1/min{score2}: 0.4186] [885, 2275]: Comparing 1dmt_A and 1hs6_A, based on their crossing files. There are 48 (37 H + 11 S) secondary structure elements in 1dmt_A, of which 41 satisfy the size requirements. There are 50 (28 H + 22 S) secondary structure elements in 1hs6_A, of which 16 satisfy the size requirements. 8.23009 [ 3.61922] ((30 . 20) (34 . 24) (39 . 31) (45 . 36) (46 . 37)) 8.513 {2/7:10} B:0 10.25001 [ 4.00015] ((35 . 20) (43 . 28) (44 . 30) (48 . 34)) 7.100 {0/5:6} B:0 10.25004 [ 4.00062] ((19 . 22) (20 . 23) (32 . 37) (33 . 38)) 10.113 {0/5:6} B:0 10.25005 [ 4.00083] ((4 . 22) (11 . 29) (19 . 35) (20 . 37)) 10.850 {0/5:6} B:0 10.25006 [ 4.00096] ((9 . 22) (10 . 23) (14 . 30) (15 . 31)) 11.261 {0/6:6} B:0 SIMILARITY (1/min{score1}): 0.2412 [and 1/min{score2}: 0.4966] [885, 2362]: Comparing 1dmt_A and 1i1i_P, based on their crossing files. There are 48 (37 H + 11 S) secondary structure elements in 1dmt_A, of which 41 satisfy the size requirements. There are 38 (31 H + 7 S) secondary structure elements in 1i1i_P, of which 34 satisfy the size requirements. 5.70033 [ 5.36558] ((6 . 5) (14 . 15) (15 . 32) (20 . 36) (22 . 38) (24 . 8) (33 . 27) (41 . 13) (46 . 19)) 10.059 {12/24:36} B:2 4.39449 [ 4.16563] ((1 . 5) (2 . 8) (4 . 16) (26 . 29) (29 . 10) (31 . 21) (32 . 30) (33 . 38) (37 . 13) (39 . 14) (46 . 32) (47 . 15)) 10.108 {20/51:66} B:3 4.39450 [ 4.16564] ((2 . 37) (4 . 17) (5 . 32) (13 . 5) (24 . 15) (25 . 16) (31 . 19) (32 . 13) (33 . 14) (37 . 30) (44 . 35) (47 . 36)) 10.138 {20/51:66} B:3 4.65583 [ 3.94770] ((7 . 5) (9 . 15) (10 . 16) (14 . 14) (15 . 33) (25 . 13) (26 . 27) (27 . 21) (37 . 31)) 9.597 {7/28:36} B:3 5.40286 [ 5.28522] ((7 . 20) (13 . 29) (14 . 30) (15 . 31) (19 . 33) (20 . 13) (22 . 32) (25 . 21) (28 . 1) (29 . 5) (39 . 7) (45 . 24)) 8.165 {30/58:66} B:3 SIMILARITY (1/min{score1}): 0.2418 [and 1/min{score2}: 0.2540] [885, 2440]: Comparing 1dmt_A and 1iae, based on their crossing files. There are 48 (37 H + 11 S) secondary structure elements in 1dmt_A, of which 41 satisfy the size requirements. There are 19 (10 H + 9 S) secondary structure elements in 1iae, of which 11 satisfy the size requirements. 6.98328 [ 3.80251] ((28 . 5) (30 . 7) (34 . 8) (35 . 9) (37 . 10) (39 . 12)) 5.500 {3/8:15} B:0 10.25000 [ 2.75010] ((30 . 4) (34 . 8) (35 . 9) (37 . 10)) 4.869 {0/2:6} B:0 10.25002 [ 2.75101] ((11 . 7) (12 . 8) (15 . 12) (22 . 19)) 8.614 {0/2:6} B:0 10.25009 [ 2.75465] ((21 . 4) (22 . 5) (26 . 10) (33 . 19)) 12.626 {0/4:6} B:0 10.25012 [ 2.75636] ((3 . 4) (5 . 5) (10 . 10) (11 . 13)) 13.656 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.1432 [and 1/min{score2}: 0.3636] [885, 2757]: Comparing 1dmt_A and 1j7n_A, based on their crossing files. There are 48 (37 H + 11 S) secondary structure elements in 1dmt_A, of which 41 satisfy the size requirements. There are 60 (41 H + 19 S) secondary structure elements in 1j7n_A, of which 19 satisfy the size requirements. 10.25001 [ 4.75007] ((29 . 1) (34 . 12) (37 . 14) (43 . 20)) 6.544 {0/5:6} B:0 10.25001 [ 4.75007] ((29 . 1) (30 . 2) (34 . 12) (37 . 14)) 6.623 {0/5:6} B:0 10.25001 [ 4.75008] ((34 . 2) (43 . 14) (47 . 21) (48 . 22)) 6.791 {0/5:6} B:0 10.25001 [ 4.75012] ((5 . 3) (13 . 15) (14 . 16) (15 . 19)) 7.574 {0/4:6} B:0 10.25002 [ 4.75017] ((19 . 3) (21 . 5) (27 . 16) (33 . 23)) 8.366 {0/6:6} B:0 SIMILARITY (1/min{score1}): 0.2415 [and 1/min{score2}: 0.4646] [885, 2759]: Comparing 1dmt_A and 1j7n_A, based on their crossing files. There are 48 (37 H + 11 S) secondary structure elements in 1dmt_A, of which 41 satisfy the size requirements. There are 60 (41 H + 19 S) secondary structure elements in 1j7n_A, of which 13 satisfy the size requirements. 8.20002 [ 2.60052] ((28 . 45) (30 . 46) (34 . 53) (35 . 54) (37 . 55)) 6.985 {0/5:10} B:0 8.64578 [ 5.77462] ((27 . 45) (34 . 46) (37 . 48) (43 . 55) (47 . 58)) 7.650 {4/7:10} B:0 10.25000 [ 3.25015] ((34 . 46) (43 . 55) (47 . 59) (48 . 60)) 6.088 {0/5:6} B:0 10.25001 [ 3.25031] ((37 . 48) (43 . 55) (47 . 59) (48 . 60)) 7.289 {0/5:6} B:0 10.25006 [ 3.25192] ((15 . 47) (25 . 55) (26 . 56) (27 . 57)) 11.474 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.2015 [and 1/min{score2}: 0.3845] [885, 2783]: Comparing 1dmt_A and 1jak_A, based on their crossing files. There are 48 (37 H + 11 S) secondary structure elements in 1dmt_A, of which 41 satisfy the size requirements. There are 37 (20 H + 17 S) secondary structure elements in 1jak_A, of which 7 satisfy the size requirements. 10.68066 [ 6.67458] ((30 . 1) (34 . 6) (35 . 7) (37 . 9)) 5.433 {2/3:6} B:0 8.31370 [ 4.01503] ((30 . 12) (34 . 8) (35 . 7) (37 . 9) (43 . 4)) 6.539 {2/5:10} B:3 SIMILARITY (1/min{score1}): 0.1203 [and 1/min{score2}: 0.2491] [885, 2940]: Comparing 1dmt_A and 1jk3_A, based on their crossing files. There are 48 (37 H + 11 S) secondary structure elements in 1dmt_A, of which 41 satisfy the size requirements. There are 10 (3 H + 7 S) secondary structure elements in 1jk3_A, of which 8 satisfy the size requirements. 6.84585 [ 2.09258] ((28 . 2) (30 . 4) (34 . 5) (35 . 6) (37 . 9) (39 . 10)) 5.536 {2/10:15} B:0 8.20000 [ 1.60015] ((28 . 2) (30 . 4) (34 . 5) (35 . 6) (37 . 9)) 3.553 {0/6:10} B:0 10.25000 [ 2.00045] ((30 . 1) (34 . 5) (35 . 6) (37 . 9)) 5.553 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.1461 [and 1/min{score2}: 0.6249] [885, 3235]: Comparing 1dmt_A and 1k9x_A, based on their crossing files. There are 48 (37 H + 11 S) secondary structure elements in 1dmt_A, of which 41 satisfy the size requirements. There are 30 (27 H + 3 S) secondary structure elements in 1k9x_A, of which 28 satisfy the size requirements. 5.55760 [ 4.98390] ((4 . 22) (5 . 23) (6 . 24) (9 . 1) (13 . 27) (15 . 28) (25 . 29) (26 . 21) (46 . 25)) 9.378 {11/23:36} B:2 4.05934 [ 3.82464] ((20 . 3) (23 . 6) (25 . 22) (28 . 10) (30 . 13) (31 . 1) (32 . 2) (33 . 5) (34 . 12) (35 . 11) (37 . 14) (43 . 16) (44 . 19) (47 . 30)) 10.979 {24/64:91} B:3 4.93570 [ 4.00179] ((4 . 18) (7 . 30) (10 . 8) (14 . 14) (20 . 22) (22 . 23) (23 . 16) (24 . 26) (25 . 10)) 8.603 {10/28:36} B:3 5.08301 [ 4.76731] ((2 . 10) (13 . 22) (25 . 23) (26 . 5) (28 . 4) (29 . 3) (37 . 7) (39 . 8) (44 . 14) (46 . 21) (48 . 27)) 11.588 {21/45:55} B:3 5.08913 [ 4.87357] ((2 . 10) (13 . 22) (25 . 23) (26 . 5) (28 . 4) (29 . 3) (37 . 7) (39 . 8) (44 . 14) (46 . 21) (47 . 25) (48 . 27)) 11.273 {25/52:66} B:3 SIMILARITY (1/min{score1}): 0.2543 [and 1/min{score2}: 0.3120] [885, 3242]: Comparing 1dmt_A and 1kap_P, based on their crossing files. There are 48 (37 H + 11 S) secondary structure elements in 1dmt_A, of which 41 satisfy the size requirements. There are 39 (13 H + 26 S) secondary structure elements in 1kap_P, of which 11 satisfy the size requirements. 6.83526 [ 1.92575] ((28 . 8) (30 . 10) (34 . 11) (35 . 12) (37 . 13) (39 . 16)) 5.551 {1/8:15} B:0 8.20000 [ 2.20003] ((28 . 8) (30 . 10) (34 . 11) (35 . 12) (37 . 13)) 3.142 {0/6:10} B:0 10.25001 [ 2.75064] ((34 . 11) (35 . 12) (37 . 13) (43 . 16)) 7.696 {0/0:6} B:0 10.25002 [ 2.75099] ((2 . 1) (4 . 4) (11 . 10) (12 . 11)) 8.578 {0/5:6} B:0 10.25010 [ 2.75535] ((5 . 4) (10 . 8) (12 . 10) (15 . 13)) 13.081 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.1661 [and 1/min{score2}: 0.5193] [885, 3321]: Comparing 1dmt_A and 1kjo_A, based on their crossing files. There are 48 (37 H + 11 S) secondary structure elements in 1dmt_A, of which 41 satisfy the size requirements. There are 26 (11 H + 15 S) secondary structure elements in 1kjo_A, of which 17 satisfy the size requirements. 8.20002 [ 3.40029] ((30 . 5) (34 . 11) (35 . 12) (37 . 14) (44 . 24)) 7.402 {0/6:10} B:0 10.25001 [ 4.25008] ((26 . 14) (31 . 20) (32 . 21) (33 . 24)) 6.293 {0/4:6} B:0 10.25001 [ 4.25015] ((29 . 9) (37 . 15) (44 . 25) (47 . 26)) 7.463 {0/5:6} B:0 10.25002 [ 4.25033] ((10 . 20) (11 . 22) (12 . 23) (13 . 24)) 9.021 {0/3:6} B:0 10.25002 [ 4.25033] ((39 . 14) (43 . 15) (44 . 18) (47 . 21)) 9.032 {0/6:6} B:0 SIMILARITY (1/min{score1}): 0.1788 [and 1/min{score2}: 0.3514] [885, 3439]: Comparing 1dmt_A and 1kuf_A, based on their crossing files. There are 48 (37 H + 11 S) secondary structure elements in 1dmt_A, of which 41 satisfy the size requirements. There are 13 (8 H + 5 S) secondary structure elements in 1kuf_A, of which 11 satisfy the size requirements. 5.89213 [ 2.42313] ((27 . 2) (28 . 3) (30 . 7) (34 . 9) (35 . 10) (37 . 11) (39 . 12)) 5.798 {3/13:21} B:0 10.25005 [ 2.75234] ((30 . 1) (32 . 2) (33 . 3) (37 . 6)) 10.636 {0/5:6} B:0 10.25005 [ 2.75244] ((10 . 6) (11 . 9) (12 . 10) (15 . 12)) 10.742 {0/3:6} B:0 10.25006 [ 2.75316] ((5 . 3) (10 . 6) (11 . 9) (12 . 10)) 11.462 {0/4:6} B:0 10.25909 [ 3.13340] ((20 . 6) (21 . 10) (23 . 11) (26 . 12)) 9.847 {1/4:6} B:0 SIMILARITY (1/min{score1}): 0.1697 [and 1/min{score2}: 0.4544] [885, 3570]: Comparing 1dmt_A and 1l8n_A, based on their crossing files. There are 48 (37 H + 11 S) secondary structure elements in 1dmt_A, of which 41 satisfy the size requirements. There are 40 (22 H + 18 S) secondary structure elements in 1l8n_A, of which 9 satisfy the size requirements. 10.25000 [ 2.25018] ((30 . 1) (34 . 7) (35 . 8) (37 . 9)) 4.817 {0/2:6} B:0 10.25007 [ 2.25664] ((28 . 2) (30 . 4) (32 . 6) (33 . 9)) 11.880 {0/3:6} B:0 10.25011 [ 2.26033] ((18 . 1) (20 . 2) (22 . 6) (25 . 9)) 13.275 {0/3:6} B:0 10.27859 [ 3.49549] ((18 . 1) (19 . 2) (22 . 6) (23 . 9)) 10.754 {1/3:6} B:0 10.27863 [ 3.49652] ((29 . 2) (30 . 3) (32 . 6) (33 . 9)) 12.567 {1/3:6} B:0 SIMILARITY (1/min{score1}): 0.1412 [and 1/min{score2}: 0.4444] [885, 3669]: Comparing 1dmt_A and 1lml, based on their crossing files. There are 48 (37 H + 11 S) secondary structure elements in 1dmt_A, of which 41 satisfy the size requirements. There are 49 (20 H + 29 S) secondary structure elements in 1lml, of which 28 satisfy the size requirements. 10.25001 [ 7.00002] ((2 . 8) (13 . 21) (14 . 25) (27 . 40)) 6.554 {0/5:6} B:0 10.25001 [ 7.00003] ((25 . 30) (29 . 40) (34 . 45) (35 . 47)) 7.043 {0/4:6} B:0 10.25181 [ 7.00568] ((5 . 27) (7 . 30) (11 . 33) (18 . 45)) 8.601 {1/6:6} B:0 10.25374 [ 7.01173] ((2 . 14) (3 . 17) (18 . 33) (28 . 49)) 9.741 {1/5:6} B:0 10.25375 [ 7.01174] ((23 . 13) (25 . 21) (27 . 30) (32 . 48)) 9.922 {1/5:6} B:0 SIMILARITY (1/min{score1}): 0.2129 [and 1/min{score2}: 0.2861] [885, 4338]: Comparing 1dmt_A and 1now_A, based on their crossing files. There are 48 (37 H + 11 S) secondary structure elements in 1dmt_A, of which 41 satisfy the size requirements. There are 36 (18 H + 18 S) secondary structure elements in 1now_A, of which 9 satisfy the size requirements. 10.53857 [ 6.03006] ((11 . 2) (14 . 5) (18 . 8) (21 . 11)) 13.725 {3/5:6} B:0 SIMILARITY (1/min{score1}): 0.0949 [and 1/min{score2}: 0.1658] [885, 4550]: Comparing 1dmt_A and 1o8a_A, based on their crossing files. There are 48 (37 H + 11 S) secondary structure elements in 1dmt_A, of which 41 satisfy the size requirements. There are 36 (30 H + 6 S) secondary structure elements in 1o8a_A, of which 29 satisfy the size requirements. 4.80920 [ 4.56101] ((4 . 1) (26 . 6) (27 . 11) (28 . 24) (29 . 26) (31 . 27) (32 . 28) (33 . 10) (37 . 22) (39 . 17) (43 . 18) (47 . 19)) 8.895 {21/47:66} B:2 5.04729 [ 4.57250] ((26 . 6) (27 . 11) (28 . 24) (29 . 26) (31 . 27) (33 . 10) (37 . 22) (39 . 17) (43 . 18) (47 . 19)) 7.278 {14/32:45} B:2 4.25691 [ 3.68145] ((2 . 10) (4 . 1) (5 . 4) (15 . 13) (25 . 27) (26 . 12) (31 . 22) (33 . 34) (41 . 9) (43 . 17) (46 . 28)) 11.925 {15/44:55} B:3 4.26813 [ 3.30981] ((4 . 9) (5 . 14) (23 . 17) (27 . 27) (28 . 12) (31 . 13) (33 . 22) (37 . 11) (39 . 1) (44 . 6)) 10.474 {9/34:45} B:3 4.52950 [ 3.80255] ((4 . 22) (5 . 33) (7 . 13) (10 . 35) (20 . 36) (23 . 14) (26 . 24) (33 . 31) (41 . 9) (43 . 17)) 10.163 {12/35:45} B:3 SIMILARITY (1/min{score1}): 0.2756 [and 1/min{score2}: 0.3021] [885, 4844]: Comparing 1dmt_A and 1oz9_A, based on their crossing files. There are 48 (37 H + 11 S) secondary structure elements in 1dmt_A, of which 41 satisfy the size requirements. There are 10 (5 H + 5 S) secondary structure elements in 1oz9_A, of which 9 satisfy the size requirements. 8.21768 [ 2.65408] ((30 . 1) (33 . 4) (34 . 5) (35 . 7) (37 . 9)) 7.911 {1/4:10} B:0 8.25542 [ 3.40217] ((34 . 1) (37 . 2) (39 . 8) (43 . 9) (44 . 10)) 6.122 {3/9:10} B:0 8.64579 [ 5.72839] ((30 . 1) (34 . 5) (35 . 7) (37 . 9) (39 . 10)) 8.169 {4/7:10} B:0 8.73332 [ 6.01216] ((35 . 1) (37 . 2) (39 . 8) (43 . 9) (44 . 10)) 7.027 {6/10:10} B:0 10.25004 [ 2.25375] ((39 . 2) (43 . 8) (44 . 9) (47 . 10)) 10.295 {0/6:6} B:0 SIMILARITY (1/min{score1}): 0.1844 [and 1/min{score2}: 0.5555] [885, 5279]: Comparing 1dmt_A and 1qba, based on their crossing files. There are 48 (37 H + 11 S) secondary structure elements in 1dmt_A, of which 41 satisfy the size requirements. There are 70 (33 H + 37 S) secondary structure elements in 1qba, of which 11 satisfy the size requirements. 10.25383 [ 2.92999] ((22 . 16) (23 . 17) (26 . 21) (30 . 27)) 13.511 {1/5:6} B:0 10.25389 [ 2.93241] ((20 . 16) (25 . 21) (28 . 28) (30 . 29)) 14.897 {1/5:6} B:0 10.25401 [ 2.93784] ((20 . 16) (24 . 21) (28 . 28) (30 . 29)) 17.088 {1/5:6} B:0 10.53849 [ 6.06527] ((25 . 16) (28 . 21) (30 . 23) (34 . 29)) 9.553 {3/5:6} B:0 10.53854 [ 6.06555] ((23 . 16) (28 . 21) (30 . 27) (32 . 28)) 12.568 {3/5:6} B:0 SIMILARITY (1/min{score1}): 0.1211 [and 1/min{score2}: 0.3413] -------------------------------------------------------------------------------------------------------------------------