------------------------------------------------------------------------------------------------------------------------- Will print the top 5 alignments (based on backbone shifts) for each pairing of chains, as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: score1 [score2] pairings L2ERR {Xbad/Xsig:Xtot} Breaks (score2 is the score from protein2's perspective, not the minimum of the two perspectives as in some earlier printouts.) Recall that "SIMILARITY" refers to similarities over all alignments not just the top ones. ------------------------------------------------------------------------------------------------------------------------- [1992, 628]: Comparing 1gx1_A and 1cli_A, based on their crossing files. There are 14 (7 H + 7 S) secondary structure elements in 1gx1_A, of which 10 satisfy the size requirements. There are 26 (14 H + 12 S) secondary structure elements in 1cli_A, of which 10 satisfy the size requirements. 2.00011 [ 2.00011] ((8 . 7) (9 . 8) (10 . 9) (12 . 10) (14 . 11)) 3.897 {0/2:10} B:0 2.50111 [ 2.50111] ((8 . 7) (9 . 8) (10 . 9) (12 . 11)) 8.206 {0/1:6} B:0 2.50114 [ 2.50114] ((1 . 5) (5 . 7) (8 . 9) (9 . 10)) 8.262 {0/2:6} B:0 2.50250 [ 2.50250] ((1 . 4) (8 . 9) (9 . 10) (12 . 11)) 10.068 {0/0:6} B:0 2.50261 [ 2.50261] ((1 . 5) (5 . 7) (8 . 9) (9 . 11)) 10.174 {0/0:6} B:0 SIMILARITY (1/min{score1}): 0.5000 [and 1/min{score2}: 0.5000] [1992, 636]: Comparing 1gx1_A and 1cn9_A, based on their crossing files. There are 14 (7 H + 7 S) secondary structure elements in 1gx1_A, of which 10 satisfy the size requirements. There are 9 (5 H + 4 S) secondary structure elements in 1cn9_A, of which 9 satisfy the size requirements. 2.50042 [ 2.25058] ((9 . 2) (10 . 5) (12 . 6) (14 . 8)) 6.458 {0/0:6} B:0 2.50177 [ 2.25243] ((5 . 3) (8 . 5) (9 . 6) (10 . 9)) 9.230 {0/2:6} B:0 5.00842 [ 5.00557] ((1 . 2) (5 . 3) (9 . 4) (10 . 5) (12 . 6) (13 . 7) (14 . 8)) 7.741 {3/6:21} B:0 5.71994 [ 5.71802] ((1 . 2) (8 . 3) (9 . 4) (10 . 5) (12 . 6) (13 . 7) (14 . 8)) 7.949 {4/7:21} B:0 1.66911 [ 1.50335] ((1 . 2) (5 . 3) (8 . 5) (9 . 4) (12 . 6) (14 . 8)) 7.382 {0/1:15} B:1 SIMILARITY (1/min{score1}): 0.5991 [and 1/min{score2}: 0.6652] [1992, 935]: Comparing 1gx1_A and 1dt9_A, based on their crossing files. There are 14 (7 H + 7 S) secondary structure elements in 1gx1_A, of which 10 satisfy the size requirements. There are 26 (13 H + 13 S) secondary structure elements in 1dt9_A, of which 8 satisfy the size requirements. 5.01545 [ 5.00640] ((1 . 20) (8 . 21) (9 . 22) (10 . 23) (12 . 24) (14 . 26)) 7.302 {3/6:15} B:0 5.07648 [ 5.03182] ((1 . 20) (5 . 21) (8 . 23) (9 . 24)) 7.989 {1/2:6} B:0 5.72464 [ 5.71856] ((1 . 20) (5 . 21) (9 . 22) (10 . 23) (12 . 24) (14 . 26)) 6.897 {4/7:15} B:0 6.04474 [ 6.01847] ((10 . 23) (12 . 24) (13 . 25) (14 . 26)) 6.523 {3/5:6} B:0 6.69954 [ 6.68028] ((3 . 20) (5 . 21) (8 . 23) (9 . 24)) 10.475 {2/3:6} B:0 SIMILARITY (1/min{score1}): 0.1994 [and 1/min{score2}: 0.1997] [1992, 1064]: Comparing 1gx1_A and 1e7k_A, based on their crossing files. There are 14 (7 H + 7 S) secondary structure elements in 1gx1_A, of which 10 satisfy the size requirements. There are 10 (6 H + 4 S) secondary structure elements in 1e7k_A, of which 10 satisfy the size requirements. 1.66861 [ 1.66861] ((1 . 2) (8 . 3) (9 . 4) (10 . 5) (12 . 7) (14 . 9)) 6.972 {0/4:15} B:0 2.50080 [ 2.50080] ((9 . 2) (10 . 5) (12 . 7) (14 . 9)) 7.564 {0/1:6} B:0 2.61564 [ 2.61564] ((1 . 2) (5 . 3) (9 . 4) (10 . 6) (12 . 7) (14 . 9)) 6.589 {1/4:15} B:0 4.01634 [ 4.01634] ((1 . 2) (5 . 3) (9 . 4) (10 . 5) (12 . 7) (13 . 8) (14 . 9)) 7.360 {4/10:21} B:0 4.45638 [ 4.45638] ((1 . 2) (5 . 3) (9 . 4) (10 . 6) (12 . 7) (13 . 8) (14 . 9)) 7.250 {4/9:21} B:0 SIMILARITY (1/min{score1}): 0.5993 [and 1/min{score2}: 0.5993] [1992, 1622]: Comparing 1gx1_A and 1fsz, based on their crossing files. There are 14 (7 H + 7 S) secondary structure elements in 1gx1_A, of which 10 satisfy the size requirements. There are 25 (13 H + 12 S) secondary structure elements in 1fsz, of which 9 satisfy the size requirements. 1.66725 [ 1.50080] ((1 . 18) (5 . 19) (9 . 20) (10 . 21) (12 . 22) (14 . 23)) 5.155 {0/7:15} B:0 2.00042 [ 1.80057] ((8 . 19) (9 . 20) (10 . 21) (12 . 22) (14 . 23)) 5.436 {0/4:10} B:0 3.57131 [ 3.49518] ((5 . 17) (8 . 19) (9 . 20) (10 . 21)) 9.995 {1/3:6} B:0 5.07648 [ 5.05062] ((8 . 19) (9 . 20) (10 . 21) (12 . 23)) 8.112 {2/4:6} B:0 SIMILARITY (1/min{score1}): 0.5998 [and 1/min{score2}: 0.6663] [1992, 1992]: Comparing 1gx1_A and 1gx1_A, based on their crossing files. There are 14 (7 H + 7 S) secondary structure elements in 1gx1_A, of which 10 satisfy the size requirements. There are 14 (7 H + 7 S) secondary structure elements in 1gx1_A, of which 10 satisfy the size requirements. 1.00000 [ 1.00000] ((1 . 1) (2 . 2) (3 . 3) (5 . 5) (8 . 8) (9 . 9) (10 . 10) (12 . 12) (13 . 13) (14 . 14)) 0.000 {0/28:45} B:0 2.50287 [ 2.50287] ((3 . 1) (8 . 5) (10 . 8) (12 . 9)) 10.417 {0/2:6} B:0 2.50287 [ 2.50287] ((1 . 3) (5 . 8) (8 . 10) (9 . 12)) 10.417 {0/2:6} B:0 3.43652 [ 3.43652] ((5 . 5) (8 . 8) (9 . 9) (10 . 10) (14 . 12)) 5.178 {2/6:10} B:0 3.43652 [ 3.43652] ((5 . 5) (8 . 8) (9 . 9) (10 . 10) (12 . 14)) 5.178 {2/6:10} B:0 SIMILARITY (1/min{score1}): 1.0000 [and 1/min{score2}: 1.0000] [1992, 2012]: Comparing 1gx1_A and 1gz0_A, based on their crossing files. There are 14 (7 H + 7 S) secondary structure elements in 1gx1_A, of which 10 satisfy the size requirements. There are 23 (12 H + 11 S) secondary structure elements in 1gz0_A, of which 7 satisfy the size requirements. 2.72437 [ 2.55971] ((1 . 1) (9 . 4) (10 . 5) (12 . 6) (14 . 8)) 6.439 {1/4:10} B:0 5.01544 [ 5.00378] ((1 . 1) (8 . 2) (9 . 4) (10 . 5) (12 . 6) (14 . 8)) 7.124 {3/6:15} B:0 6.69948 [ 6.67467] ((9 . 1) (12 . 6) (13 . 7) (14 . 8)) 9.407 {2/3:6} B:0 5.03179 [ 5.00776] ((1 . 1) (9 . 4) (10 . 2) (12 . 6) (14 . 8)) 7.430 {2/4:10} B:1 SIMILARITY (1/min{score1}): 0.3671 [and 1/min{score2}: 0.3907] [1992, 2123]: Comparing 1gx1_A and 1h7m_A, based on their crossing files. There are 14 (7 H + 7 S) secondary structure elements in 1gx1_A, of which 10 satisfy the size requirements. There are 9 (5 H + 4 S) secondary structure elements in 1h7m_A, of which 8 satisfy the size requirements. 5.56682 [ 5.56021] ((1 . 2) (9 . 4) (10 . 5) (12 . 6) (13 . 7) (14 . 8)) 6.936 {5/9:15} B:0 6.36771 [ 6.36533] ((1 . 2) (5 . 3) (9 . 4) (10 . 5) (12 . 6) (13 . 7) (14 . 8)) 7.207 {7/11:21} B:0 6.36771 [ 6.36533] ((1 . 2) (8 . 3) (9 . 4) (10 . 5) (12 . 6) (13 . 7) (14 . 8)) 7.295 {7/11:21} B:0 6.69946 [ 6.68021] ((5 . 1) (8 . 3) (9 . 6) (10 . 7)) 8.920 {2/3:6} B:0 10.00976 [10.00401] ((9 . 2) (10 . 3) (12 . 6) (14 . 8)) 6.992 {1/1:6} B:0 SIMILARITY (1/min{score1}): 0.1796 [and 1/min{score2}: 0.1798] [1992, 2555]: Comparing 1gx1_A and 1ipa_A, based on their crossing files. There are 14 (7 H + 7 S) secondary structure elements in 1gx1_A, of which 10 satisfy the size requirements. There are 23 (12 H + 11 S) secondary structure elements in 1ipa_A, of which 9 satisfy the size requirements. 2.00074 [ 1.80101] ((1 . 4) (8 . 5) (9 . 6) (12 . 8) (14 . 10)) 6.274 {0/2:10} B:0 2.50014 [ 2.25019] ((8 . 5) (9 . 6) (12 . 8) (14 . 10)) 4.899 {0/0:6} B:0 4.02991 [ 4.01974] ((1 . 4) (8 . 5) (9 . 6) (10 . 7) (12 . 8) (14 . 10)) 6.557 {2/5:15} B:0 SIMILARITY (1/min{score1}): 0.4998 [and 1/min{score2}: 0.5552] [1992, 2620]: Comparing 1gx1_A and 1iv3_A, based on their crossing files. There are 14 (7 H + 7 S) secondary structure elements in 1gx1_A, of which 10 satisfy the size requirements. There are 12 (5 H + 7 S) secondary structure elements in 1iv3_A, of which 10 satisfy the size requirements. 1.11113 [ 1.11113] ((1 . 1) (2 . 2) (3 . 3) (5 . 5) (8 . 7) (9 . 8) (10 . 9) (12 . 11) (14 . 12)) 1.683 {0/20:36} B:0 1.12293 [ 1.12293] ((1 . 1) (2 . 2) (3 . 4) (5 . 5) (8 . 7) (9 . 8) (10 . 9) (12 . 11) (14 . 12)) 3.867 {1/20:36} B:0 1.53946 [ 1.53946] ((2 . 1) (3 . 4) (5 . 5) (8 . 7) (9 . 8) (10 . 9) (12 . 11) (14 . 12)) 5.575 {2/15:28} B:0 2.00004 [ 2.00004] ((3 . 2) (5 . 5) (8 . 7) (9 . 8) (10 . 9)) 3.009 {0/5:10} B:0 2.50072 [ 2.50072] ((3 . 1) (5 . 5) (8 . 7) (9 . 8)) 7.382 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.9000 [and 1/min{score2}: 0.9000] [1992, 2827]: Comparing 1gx1_A and 1jd1_B, based on their crossing files. There are 14 (7 H + 7 S) secondary structure elements in 1gx1_A, of which 10 satisfy the size requirements. There are 10 (4 H + 6 S) secondary structure elements in 1jd1_B, of which 8 satisfy the size requirements. 1.66745 [ 1.33486] ((1 . 3) (5 . 4) (9 . 6) (10 . 7) (12 . 8) (14 . 10)) 5.552 {0/5:15} B:0 1.66765 [ 1.33525] ((1 . 3) (8 . 4) (9 . 6) (10 . 7) (12 . 8) (14 . 10)) 5.879 {0/5:15} B:0 1.68726 [ 1.37254] ((3 . 1) (8 . 4) (9 . 6) (10 . 7) (12 . 8) (14 . 10)) 12.632 {0/5:15} B:0 2.00435 [ 1.60845] ((1 . 3) (2 . 6) (8 . 7) (12 . 8) (14 . 10)) 9.779 {0/0:10} B:0 2.50222 [ 2.00432] ((1 . 1) (8 . 4) (9 . 6) (10 . 7)) 9.763 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.5997 [and 1/min{score2}: 0.7491] [1992, 4583]: Comparing 1gx1_A and 1oap_A, based on their crossing files. There are 14 (7 H + 7 S) secondary structure elements in 1gx1_A, of which 10 satisfy the size requirements. There are 8 (4 H + 4 S) secondary structure elements in 1oap_A, of which 7 satisfy the size requirements. 1.66811 [ 1.17086] ((1 . 1) (8 . 2) (9 . 3) (10 . 4) (12 . 6) (14 . 8)) 6.471 {0/6:15} B:0 2.00036 [ 1.40105] ((8 . 2) (9 . 3) (10 . 4) (12 . 6) (14 . 8)) 5.245 {0/3:10} B:0 2.50065 [ 1.75190] ((8 . 2) (9 . 3) (10 . 4) (14 . 6)) 7.193 {0/1:6} B:0 SIMILARITY (1/min{score1}): 0.5995 [and 1/min{score2}: 0.8541] [1992, 4633]: Comparing 1gx1_A and 1ofu_A, based on their crossing files. There are 14 (7 H + 7 S) secondary structure elements in 1gx1_A, of which 10 satisfy the size requirements. There are 25 (15 H + 10 S) secondary structure elements in 1ofu_A, of which 7 satisfy the size requirements. 1.66735 [ 1.16865] ((1 . 18) (5 . 19) (9 . 22) (10 . 23) (12 . 24) (14 . 25)) 5.366 {0/5:15} B:0 2.00058 [ 1.40170] ((8 . 19) (9 . 22) (10 . 23) (12 . 24) (14 . 25)) 5.913 {0/2:10} B:0 5.07656 [ 5.01886] ((8 . 19) (9 . 22) (10 . 23) (12 . 25)) 9.117 {1/2:6} B:0 1.66795 [ 1.17039] ((1 . 18) (5 . 19) (8 . 23) (9 . 22) (12 . 24) (14 . 25)) 6.280 {0/4:15} B:1 2.00065 [ 1.40190] ((1 . 18) (8 . 23) (9 . 22) (12 . 24) (14 . 25)) 6.084 {0/1:10} B:1 SIMILARITY (1/min{score1}): 0.5998 [and 1/min{score2}: 0.8557] [1992, 4667]: Comparing 1gx1_A and 1oi2_A, based on their crossing files. There are 14 (7 H + 7 S) secondary structure elements in 1gx1_A, of which 10 satisfy the size requirements. There are 25 (9 H + 16 S) secondary structure elements in 1oi2_A, of which 12 satisfy the size requirements. 1.66702 [ 2.00020] ((1 . 13) (5 . 16) (9 . 19) (10 . 20) (12 . 21) (14 . 22)) 4.551 {0/7:15} B:0 1.66714 [ 2.00027] ((1 . 13) (8 . 16) (9 . 19) (10 . 20) (12 . 21) (14 . 22)) 4.900 {0/6:15} B:0 2.00260 [ 2.40151] ((3 . 13) (8 . 16) (10 . 20) (12 . 21) (14 . 22)) 8.600 {0/4:10} B:0 3.38451 [ 3.43671] ((2 . 13) (8 . 16) (9 . 19) (10 . 20) (12 . 21) (14 . 22)) 7.252 {2/6:15} B:0 3.57257 [ 3.78314] ((1 . 14) (2 . 15) (8 . 20) (12 . 22)) 12.569 {1/3:6} B:0 SIMILARITY (1/min{score1}): 0.5999 [and 1/min{score2}: 0.4999] [1992, 4992]: Comparing 1gx1_A and 1pf5_A, based on their crossing files. There are 14 (7 H + 7 S) secondary structure elements in 1gx1_A, of which 10 satisfy the size requirements. There are 9 (3 H + 6 S) secondary structure elements in 1pf5_A, of which 8 satisfy the size requirements. 1.66768 [ 1.33530] ((1 . 3) (5 . 4) (9 . 6) (10 . 7) (12 . 8) (14 . 9)) 5.919 {0/6:15} B:0 1.66787 [ 1.33568] ((1 . 3) (8 . 4) (9 . 6) (10 . 7) (12 . 8) (14 . 9)) 6.183 {0/6:15} B:0 1.68420 [ 1.36683] ((3 . 1) (8 . 4) (9 . 6) (10 . 7) (12 . 8) (14 . 9)) 12.125 {0/5:15} B:0 2.50229 [ 2.00446] ((1 . 1) (8 . 4) (9 . 6) (10 . 7)) 9.845 {0/4:6} B:0 2.97639 [ 2.72842] ((2 . 1) (8 . 4) (9 . 6) (10 . 7)) 12.346 {1/4:6} B:0 SIMILARITY (1/min{score1}): 0.5996 [and 1/min{score2}: 0.7489] [1992, 5145]: Comparing 1gx1_A and 1pxw_A, based on their crossing files. There are 14 (7 H + 7 S) secondary structure elements in 1gx1_A, of which 10 satisfy the size requirements. There are 11 (7 H + 4 S) secondary structure elements in 1pxw_A, of which 9 satisfy the size requirements. 2.61578 [ 2.57790] ((1 . 3) (8 . 4) (9 . 5) (10 . 7) (12 . 8) (14 . 10)) 7.075 {1/4:15} B:0 2.97360 [ 2.83671] ((3 . 3) (5 . 4) (8 . 7) (10 . 11)) 7.961 {1/4:6} B:0 5.00840 [ 5.00555] ((1 . 3) (5 . 4) (9 . 5) (10 . 7) (12 . 8) (13 . 9) (14 . 10)) 7.365 {5/10:21} B:0 7.52308 [ 7.51518] ((2 . 3) (5 . 4) (8 . 7) (10 . 2)) 8.311 {3/4:6} B:1 SIMILARITY (1/min{score1}): 0.3823 [and 1/min{score2}: 0.3879] [1992, 5247]: Comparing 1gx1_A and 1q8r_A, based on their crossing files. There are 14 (7 H + 7 S) secondary structure elements in 1gx1_A, of which 10 satisfy the size requirements. There are 11 (5 H + 6 S) secondary structure elements in 1q8r_A, of which 8 satisfy the size requirements. 1.66868 [ 1.33726] ((1 . 1) (8 . 5) (9 . 6) (10 . 8) (12 . 10) (14 . 11)) 7.036 {0/8:15} B:0 1.66885 [ 1.33759] ((1 . 1) (5 . 5) (9 . 6) (10 . 8) (12 . 10) (14 . 11)) 7.181 {0/9:15} B:0 2.00040 [ 1.60079] ((1 . 1) (9 . 6) (10 . 8) (12 . 10) (14 . 11)) 5.391 {0/5:10} B:0 2.00151 [ 1.60294] ((3 . 1) (9 . 6) (10 . 8) (12 . 10) (14 . 11)) 7.502 {0/2:10} B:0 2.50126 [ 2.00246] ((1 . 1) (3 . 3) (8 . 8) (9 . 10)) 8.482 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.5994 [and 1/min{score2}: 0.7480] [1992, 5454]: Comparing 1gx1_A and 1qu9_A, based on their crossing files. There are 14 (7 H + 7 S) secondary structure elements in 1gx1_A, of which 10 satisfy the size requirements. There are 10 (4 H + 6 S) secondary structure elements in 1qu9_A, of which 8 satisfy the size requirements. 1.68393 [ 1.36633] ((3 . 1) (8 . 4) (9 . 6) (10 . 7) (12 . 8) (14 . 10)) 12.078 {0/5:15} B:0 2.50041 [ 2.00079] ((8 . 4) (9 . 6) (10 . 7) (14 . 8)) 6.384 {0/2:6} B:0 2.97665 [ 2.72876] ((2 . 1) (8 . 4) (9 . 6) (10 . 7)) 12.580 {1/4:6} B:0 10.00977 [10.00401] ((3 . 2) (8 . 7) (9 . 8) (12 . 10)) 8.018 {2/2:6} B:0 2.00045 [ 1.60088] ((5 . 4) (8 . 7) (9 . 6) (12 . 8) (14 . 10)) 5.551 {0/2:10} B:1 SIMILARITY (1/min{score1}): 0.5938 [and 1/min{score2}: 0.7319] [1992, 5526]: Comparing 1gx1_A and 1r1m_A, based on their crossing files. There are 14 (7 H + 7 S) secondary structure elements in 1gx1_A, of which 10 satisfy the size requirements. There are 10 (6 H + 4 S) secondary structure elements in 1r1m_A, of which 9 satisfy the size requirements. 1.66714 [ 1.50065] ((1 . 1) (8 . 3) (9 . 4) (10 . 5) (12 . 7) (14 . 10)) 4.903 {0/6:15} B:0 1.69962 [ 1.62145] ((1 . 1) (8 . 3) (9 . 4) (10 . 5) (12 . 7) (13 . 9) (14 . 10)) 5.570 {1/7:21} B:0 1.97161 [ 1.92313] ((1 . 1) (8 . 3) (9 . 4) (10 . 5) (12 . 7) (13 . 8) (14 . 10)) 5.830 {2/11:21} B:0 2.00019 [ 1.80026] ((8 . 3) (9 . 4) (10 . 5) (12 . 7) (14 . 10)) 4.452 {0/3:10} B:0 2.50143 [ 2.25196] ((1 . 1) (8 . 5) (9 . 7) (14 . 10)) 8.749 {0/1:6} B:0 SIMILARITY (1/min{score1}): 0.5998 [and 1/min{score2}: 0.6664] [1992, 5933]: Comparing 1gx1_A and 1tub_A, based on their crossing files. There are 14 (7 H + 7 S) secondary structure elements in 1gx1_A, of which 10 satisfy the size requirements. There are 25 (16 H + 9 S) secondary structure elements in 1tub_A, of which 9 satisfy the size requirements. 2.00058 [ 1.80079] ((5 . 17) (9 . 18) (10 . 19) (12 . 20) (14 . 22)) 5.905 {0/5:10} B:0 2.00108 [ 1.80148] ((8 . 17) (9 . 18) (10 . 19) (12 . 20) (14 . 22)) 6.904 {0/4:10} B:0 2.50125 [ 2.25171] ((5 . 16) (8 . 17) (9 . 18) (10 . 19)) 8.452 {0/3:6} B:0 2.00105 [ 1.80144] ((5 . 17) (8 . 19) (9 . 18) (12 . 20) (14 . 22)) 6.856 {0/4:10} B:1 2.00235 [ 1.80322] ((1 . 18) (8 . 17) (9 . 20) (10 . 19) (14 . 22)) 8.381 {0/2:10} B:2 SIMILARITY (1/min{score1}): 0.4999 [and 1/min{score2}: 0.5553] [1992, 5934]: Comparing 1gx1_A and 1tub_B, based on their crossing files. There are 14 (7 H + 7 S) secondary structure elements in 1gx1_A, of which 10 satisfy the size requirements. There are 27 (18 H + 9 S) secondary structure elements in 1tub_B, of which 10 satisfy the size requirements. 2.00033 [ 2.00033] ((5 . 17) (9 . 19) (10 . 20) (12 . 22) (14 . 23)) 5.131 {0/5:10} B:0 2.00063 [ 2.00063] ((8 . 17) (9 . 19) (10 . 20) (12 . 22) (14 . 23)) 6.029 {0/4:10} B:0 2.50113 [ 2.50113] ((5 . 14) (8 . 17) (9 . 19) (10 . 20)) 8.243 {0/2:6} B:0 5.07639 [ 5.07639] ((5 . 17) (9 . 19) (12 . 23) (13 . 24)) 5.665 {2/4:6} B:0 SIMILARITY (1/min{score1}): 0.4999 [and 1/min{score2}: 0.4999] [1992, 6008]: Comparing 1gx1_A and 1ufy_A, based on their crossing files. There are 14 (7 H + 7 S) secondary structure elements in 1gx1_A, of which 10 satisfy the size requirements. There are 12 (7 H + 5 S) secondary structure elements in 1ufy_A, of which 8 satisfy the size requirements. 1.66727 [ 1.33450] ((1 . 1) (8 . 2) (9 . 4) (10 . 5) (12 . 7) (14 . 8)) 5.193 {0/8:15} B:0 2.00023 [ 1.60044] ((8 . 2) (9 . 4) (10 . 5) (12 . 7) (14 . 8)) 4.668 {0/5:10} B:0 2.50453 [ 2.00881] ((1 . 1) (3 . 4) (9 . 10) (10 . 11)) 11.677 {0/2:6} B:0 2.50467 [ 2.00909] ((1 . 1) (3 . 4) (5 . 5) (9 . 10)) 11.769 {0/3:6} B:0 5.07650 [ 5.03184] ((9 . 1) (10 . 2) (12 . 4) (14 . 7)) 8.313 {1/2:6} B:0 SIMILARITY (1/min{score1}): 0.5998 [and 1/min{score2}: 0.7493] [1992, 6061]: Comparing 1gx1_A and 1un8_A, based on their crossing files. There are 14 (7 H + 7 S) secondary structure elements in 1gx1_A, of which 10 satisfy the size requirements. There are 33 (20 H + 13 S) secondary structure elements in 1un8_A, of which 10 satisfy the size requirements. 1.66696 [ 1.66696] ((1 . 13) (5 . 16) (9 . 17) (10 . 18) (12 . 20) (14 . 21)) 4.346 {0/7:15} B:0 1.66697 [ 1.66697] ((1 . 13) (8 . 16) (9 . 17) (10 . 18) (12 . 20) (14 . 21)) 4.387 {0/6:15} B:0 2.00016 [ 2.00016] ((8 . 16) (9 . 17) (10 . 18) (12 . 20) (14 . 21)) 4.311 {0/4:10} B:0 2.50060 [ 2.50060] ((1 . 13) (5 . 16) (8 . 18) (9 . 20)) 7.038 {0/2:6} B:0 3.57077 [ 3.57077] ((2 . 13) (8 . 16) (9 . 17) (10 . 18)) 7.676 {1/3:6} B:0 SIMILARITY (1/min{score1}): 0.5999 [and 1/min{score2}: 0.5999] [1992, 6300]: Comparing 1gx1_A and 1vk3_A, based on their crossing files. There are 14 (7 H + 7 S) secondary structure elements in 1gx1_A, of which 10 satisfy the size requirements. There are 48 (23 H + 25 S) secondary structure elements in 1vk3_A, of which 12 satisfy the size requirements. 1.66777 [ 2.00064] ((1 . 6) (8 . 8) (9 . 9) (10 . 10) (12 . 11) (14 . 13)) 6.055 {0/6:15} B:0 2.00026 [ 2.40015] ((8 . 8) (9 . 9) (10 . 10) (12 . 11) (14 . 13)) 4.833 {0/3:10} B:0 2.38099 [ 2.52149] ((8 . 4) (9 . 6) (10 . 8) (12 . 9) (13 . 12) (14 . 13)) 6.985 {2/9:15} B:0 2.50044 [ 3.00026] ((5 . 4) (9 . 6) (10 . 8) (12 . 9)) 6.520 {0/4:6} B:0 2.50331 [ 3.00192] ((5 . 2) (9 . 6) (10 . 8) (12 . 9)) 10.798 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.6918 [and 1/min{score2}: 0.5800] [1992, 6302]: Comparing 1gx1_A and 1vk3_A, based on their crossing files. There are 14 (7 H + 7 S) secondary structure elements in 1gx1_A, of which 10 satisfy the size requirements. There are 48 (23 H + 25 S) secondary structure elements in 1vk3_A, of which 9 satisfy the size requirements. 2.00018 [ 1.80025] ((8 . 34) (9 . 35) (10 . 36) (12 . 37) (14 . 40)) 4.408 {0/3:10} B:0 2.00168 [ 1.80230] ((5 . 29) (9 . 32) (10 . 34) (12 . 35) (14 . 40)) 7.705 {0/5:10} B:0 2.50037 [ 2.25051] ((8 . 34) (9 . 35) (10 . 36) (14 . 37)) 6.241 {0/2:6} B:0 2.50083 [ 2.25113] ((5 . 29) (9 . 32) (10 . 34) (12 . 35)) 7.625 {0/4:6} B:0 3.57457 [ 3.49865] ((9 . 31) (10 . 33) (13 . 34) (14 . 35)) 14.868 {1/3:6} B:0 SIMILARITY (1/min{score1}): 0.5000 [and 1/min{score2}: 0.5555] -------------------------------------------------------------------------------------------------------------------------