------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 796 1dcp_A) ( 289 1b4b_A) 0.8331 0.8331 3.6579 ( 0 2 10) 0 0.8331 0.8331 6 6 ( 796 1dcp_A) ( 353 1bdf_A) nil ( 796 1dcp_A) ( 500 1c0a_A) 0.8328 0.4167 4.2366 ( 0 2 10) 0 0.8328 0.4167 6 12 ( 796 1dcp_A) ( 796 1dcp_A) 1.0000 1.0000 0.0000 ( 0 2 15) 0 1.0000 1.0000 6 6 ( 796 1dcp_A) ( 2393 1i50_C) nil ( 796 1dcp_A) ( 2400 1i50_K) 0.8293 0.7124 7.1990 ( 0 1 10) 0 0.8302 0.7128 6 7 ( 796 1dcp_A) ( 3511 1l0w_A) 0.8330 0.5555 3.6971 ( 0 2 10) 0 0.8330 0.5555 6 9 ( 796 1dcp_A) ( 6353 1xxa_A) 0.8326 0.8326 4.6924 ( 0 2 10) 0 0.8326 0.8326 6 6 -------------------------------------------------------------------------------------------------------------------------