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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 6490 2mnr  )  ( 1096 1ec7_A)     0.6666   0.9998   2.5107 (   0    9   15)   0     0.6666   0.9998    9   6
( 6490 2mnr  )  ( 3009 1jpd_X)     0.7776   0.8747   3.5639 (   0   16   21)   0     0.7776   0.8747    9   8
( 6490 2mnr  )  ( 3011 1jpm_A)     0.8011   0.7437   4.0301 (   2   21   28)   0     0.8011   0.7437    9  10
( 6490 2mnr  )  ( 3336 1kko_A)     0.7624   0.6908   6.6439 (   1   15   21)   0     0.7624   0.6908    9  10
( 6490 2mnr  )  ( 4037 1muc_A)     0.7777   0.8748   3.2427 (   0   15   21)   0     0.7777   0.8748    9   8
( 6490 2mnr  )  ( 4726 1one_A)     0.7775   0.8745   3.9093 (   0   16   21)   0     0.7775   0.8745    9   8
( 6490 2mnr  )  ( 5708 1rvk_A)     0.8880   0.8880   4.5323 (   0   19   28)   0     0.8880   0.8880    9   9
( 6490 2mnr  )  ( 6490 2mnr  )     1.0000   1.0000   0.0000 (   0   28   36)   0     1.0000   1.0000    9   9

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