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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4037 1muc_A)  ( 1096 1ec7_A)     0.7500   0.9998   2.6378 (   0    9   15)   0     0.7500   0.9998    8   6
( 4037 1muc_A)  ( 3009 1jpd_X)     0.9774   0.9774   2.0625 (   1   18   28)   0     0.9774   0.9774    8   8
( 4037 1muc_A)  ( 3011 1jpm_A)     0.9999   0.8000   2.0413 (   0   16   28)   0     0.9999   0.8000    8  10
( 4037 1muc_A)  ( 3336 1kko_A)     0.9997   0.7999   2.9808 (   0   18   28)   0     0.9997   0.7999    8  10
( 4037 1muc_A)  ( 4037 1muc_A)     1.0000   1.0000   0.0000 (   0   20   28)   0     1.0000   1.0000    8   8
( 4037 1muc_A)  ( 4726 1one_A)     0.9998   0.9998   2.5655 (   0   19   28)   0     0.9998   0.9998    8   8
( 4037 1muc_A)  ( 5708 1rvk_A)     0.9994   0.8885   3.5905 (   0   17   28)   0     0.9994   0.8885    8   9
( 4037 1muc_A)  ( 6490 2mnr  )     0.8748   0.7777   3.2427 (   0   15   21)   0     0.8748   0.7777    8   9

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