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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 3120 1k0r_A)  ( 1147 1ega_A)     0.9994   0.8568   3.5989 (   0   12   15)   0     0.9994   0.8568    6   7
( 3120 1k0r_A)  ( 1517 1fjg_C)     0.9962   0.8554   5.6365 (   0   12   15)   0     0.9962   0.8554    6   7
( 3120 1k0r_A)  ( 1903 1gpm_A)     0.8325   0.7139   4.7850 (   0    8   10)   0     0.8325   0.7139    6   7
( 3120 1k0r_A)  ( 3005 1jos_A)     0.8772   0.8772   4.4297 (   1   11   15)   0     0.8772   0.8772    6   6
( 3120 1k0r_A)  ( 3119 1k0r_A)     0.9998   0.8571   2.6658 (   0   12   15)   0     0.9998   0.8571    6   7
( 3120 1k0r_A)  ( 3120 1k0r_A)     1.0000   1.0000   0.0000 (   0   12   15)   0     1.0000   1.0000    6   6
( 3120 1k0r_A)  ( 6202 1v9j_A)     0.8333   0.8333   2.4410 (   0    5   10)   0     0.8333   0.8333    6   6
( 3120 1k0r_A)  ( 6590 3pro_C)     0.6666   0.6666   3.6746 (   0    3    6)   0     0.6666   0.6666    6   6

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