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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 3119 1k0r_A)  ( 1147 1ega_A)     0.8568   0.8568   3.8563 (   0   12   15)   0     0.8568   0.8568    7   7
( 3119 1k0r_A)  ( 1517 1fjg_C)     0.8557   0.8557   5.3809 (   0   12   15)   0     0.8557   0.8557    7   7
( 3119 1k0r_A)  ( 1903 1gpm_A)     0.7141   0.7141   3.8163 (   0    8   10)   0     0.7141   0.7141    7   7
( 3119 1k0r_A)  ( 3005 1jos_A)     0.7922   0.8775   3.9089 (   1   11   15)   0     0.7922   0.8775    7   6
( 3119 1k0r_A)  ( 3119 1k0r_A)     1.0000   1.0000   0.0000 (   0   18   21)   0     1.0000   1.0000    7   7
( 3119 1k0r_A)  ( 3120 1k0r_A)     0.8571   0.9998   2.6658 (   0   12   15)   0     0.8571   0.9998    7   6
( 3119 1k0r_A)  ( 6202 1v9j_A)     0.7142   0.8332   2.9652 (   0    5   10)   0     0.7142   0.8332    7   6
( 3119 1k0r_A)  ( 6590 3pro_C)     0.5713   0.6663   5.2161 (   0    2    6)   0     0.5713   0.6663    7   6

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