------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 6071 1uou_A) ( 454 1brw_A) 0.7934 0.7934 1.5687 ( 2 18 28) 0 0.7934 0.7934 8 8 ( 6071 1uou_A) ( 1557 1fm0_E) 0.4999 0.3333 5.5141 ( 0 0 6) 0 0.6241 0.4488 8 12 ( 6071 1uou_A) ( 1586 1fo4_A) 0.8748 0.6999 3.1527 ( 0 8 21) 0 0.8748 0.6999 8 10 ( 6071 1uou_A) ( 2906 1jj2_H) 0.7499 0.6000 3.3590 ( 0 5 15) 0 0.7499 0.6000 8 10 ( 6071 1uou_A) ( 3038 1jro_B) 0.7795 0.7795 3.4797 ( 1 10 21) 0 0.7795 0.7795 8 8 ( 6071 1uou_A) ( 4137 1n62_B) 0.7007 0.5481 3.0402 ( 1 8 21) 0 0.7007 0.5481 8 12 ( 6071 1uou_A) ( 4485 1o4u_A) 0.3848 0.3769 5.5724 ( 1 4 10) 0 0.4987 0.4437 8 9 ( 6071 1uou_A) ( 5267 1qap_A) 0.6245 0.8313 6.0615 ( 0 1 10) 0 0.6245 0.8313 8 6 ( 6071 1uou_A) ( 5411 1qpo_A) 0.6246 0.7135 5.6949 ( 0 1 10) 0 0.6246 0.7135 8 7 ( 6071 1uou_A) ( 6071 1uou_A) 1.0000 1.0000 0.0000 ( 0 19 28) 0 1.0000 1.0000 8 8 ( 6071 1uou_A) ( 6309 1vlb_A) 0.8748 0.8748 3.0874 ( 0 9 21) 0 0.8748 0.8748 8 8 ( 6071 1uou_A) ( 6547 2tpt ) 0.8444 0.8444 2.6087 ( 1 14 21) 0 0.8444 0.8444 8 8 -------------------------------------------------------------------------------------------------------------------------