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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 5267 1qap_A)  (  454 1brw_A)     0.8314   0.6245   5.9812 (   0    1   10)   0     0.8314   0.6245    6   8
( 5267 1qap_A)  ( 1557 1fm0_E)     0.8289   0.4165   7.3680 (   0    0   10)   0     0.8289   0.4165    6  12
( 5267 1qap_A)  ( 1586 1fo4_A)     0.8289   0.4996   7.3682 (   0    1   10)   0     0.8289   0.4996    6  10
( 5267 1qap_A)  ( 2906 1jj2_H)     0.8301   0.4997   6.8008 (   0    0   10)   0     0.8301   0.4997    6  10
( 5267 1qap_A)  ( 3038 1jro_B)     0.8285   0.6238   7.5378 (   0    1   10)   0     0.8285   0.6238    6   8
( 5267 1qap_A)  ( 4137 1n62_B)     0.8290   0.4165   7.2989 (   0    1   10)   0     0.8290   0.4165    6  12
( 5267 1qap_A)  ( 4485 1o4u_A)     0.9985   0.6665   4.4867 (   0    5   15)   0     0.9985   0.6665    6   9
( 5267 1qap_A)  ( 5267 1qap_A)     1.0000   1.0000   0.0000 (   0    6   15)   0     1.0000   1.0000    6   6
( 5267 1qap_A)  ( 5411 1qpo_A)     0.9995   0.8569   3.4345 (   0    6   15)   0     0.9995   0.8569    6   7
( 5267 1qap_A)  ( 6071 1uou_A)     0.8313   0.6245   6.0615 (   0    1   10)   0     0.8313   0.6245    6   8
( 5267 1qap_A)  ( 6309 1vlb_A)     0.8293   0.6240   7.2026 (   0    1   10)   0     0.8293   0.6240    6   8
( 5267 1qap_A)  ( 6547 2tpt  )     0.6650   0.4996   7.6036 (   0    0    6)   0     0.6650   0.4996    6   8

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