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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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(  454 1brw_A)  (  454 1brw_A)     1.0000   1.0000   0.0000 (   0   21   28)   0     1.0000   1.0000    8   8
(  454 1brw_A)  ( 1557 1fm0_E)     0.8740   0.5832   4.7428 (   0   11   21)   0     0.8740   0.5832    8  12
(  454 1brw_A)  ( 1586 1fo4_A)     0.7007   0.6237   2.7339 (   1    8   21)   0     0.7007   0.6237    8  10
(  454 1brw_A)  ( 2906 1jj2_H)     0.4997   0.3999   7.1120 (   0    2    6)   0     0.4997   0.4531    8  10
(  454 1brw_A)  ( 3038 1jro_B)     0.5708   0.5708   3.0369 (   2   12   21)   0     0.5708   0.5708    8   8
(  454 1brw_A)  ( 4137 1n62_B)     0.5506   0.4531   2.8494 (   1    6   15)   0     0.5506   0.4531    8  12
(  454 1brw_A)  ( 4485 1o4u_A)     0.6247   0.5554   5.4924 (   0    4   10)   0     0.6247   0.5554    8   9
(  454 1brw_A)  ( 5267 1qap_A)     0.6245   0.8314   5.9812 (   0    1   10)   0     0.6245   0.8314    8   6
(  454 1brw_A)  ( 5411 1qpo_A)     0.6246   0.7135   5.7491 (   0    1   10)   0     0.6246   0.7135    8   7
(  454 1brw_A)  ( 6071 1uou_A)     0.7934   0.7934   1.5687 (   2   18   28)   0     0.7934   0.7934    8   8
(  454 1brw_A)  ( 6309 1vlb_A)     0.7459   0.7459   2.6821 (   1    9   21)   0     0.7459   0.7459    8   8
(  454 1brw_A)  ( 6547 2tpt  )     0.9999   0.9999   1.6929 (   0   20   28)   0     0.9999   0.9999    8   8

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