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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4485 1o4u_A)  (  454 1brw_A)     0.5554   0.6247   5.4924 (   0    4   10)   0     0.5554   0.6247    9   8
( 4485 1o4u_A)  ( 1557 1fm0_E)     0.5510   0.4156  12.3401 (   0    2   10)   0     0.5510   0.4488    9  12
( 4485 1o4u_A)  ( 1586 1fo4_A)     0.4434   0.3994  11.2790 (   0    0    6)   0     0.4434   0.3994    9  10
( 4485 1o4u_A)  ( 2906 1jj2_H)     0.4805   0.4717   6.4738 (   2   10   21)   0     0.4805   0.4717    9  10
( 4485 1o4u_A)  ( 3038 1jro_B)     0.4433   0.4979  11.5271 (   0    0    6)   0     0.4433   0.4979    9   8
( 4485 1o4u_A)  ( 4137 1n62_B)     0.4443   0.3333   7.2010 (   0    2    6)   0     0.4443   0.3333    9  12
( 4485 1o4u_A)  ( 4485 1o4u_A)     1.0000   1.0000   0.0000 (   0   25   36)   0     1.0000   1.0000    9   9
( 4485 1o4u_A)  ( 5267 1qap_A)     0.6665   0.9985   4.4867 (   0    5   15)   0     0.6665   0.9985    9   6
( 4485 1o4u_A)  ( 5411 1qpo_A)     0.7355   0.8779   2.7570 (   1   11   21)   0     0.7355   0.8779    9   7
( 4485 1o4u_A)  ( 6071 1uou_A)     0.3769   0.3848   5.5724 (   1    4   10)   0     0.4437   0.4987    9   8
( 4485 1o4u_A)  ( 6309 1vlb_A)     0.4444   0.4999   4.9052 (   0    3    6)   0     0.4444   0.4999    9   8
( 4485 1o4u_A)  ( 6547 2tpt  )     0.5553   0.6246   5.8251 (   0    4   10)   0     0.5553   0.6246    9   8

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