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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 3038 1jro_B)  (  454 1brw_A)     0.5708   0.5708   3.0369 (   2   12   21)   0     0.5708   0.5708    8   8
( 3038 1jro_B)  ( 1557 1fm0_E)     0.7792   0.5675   4.4815 (   1   10   21)   0     0.7792   0.5675    8  12
( 3038 1jro_B)  ( 1586 1fo4_A)     0.9559   0.7846   0.9282 (   1   15   28)   0     0.9559   0.7846    8  10
( 3038 1jro_B)  ( 2906 1jj2_H)     0.7499   0.6000   3.2910 (   0    5   15)   0     0.7499   0.6000    8  10
( 3038 1jro_B)  ( 3038 1jro_B)     1.0000   1.0000   0.0000 (   0   19   28)   0     1.0000   1.0000    8   8
( 3038 1jro_B)  ( 4137 1n62_B)     0.9999   0.6667   1.1306 (   0   16   28)   0     0.9999   0.6667    8  12
( 3038 1jro_B)  ( 4485 1o4u_A)     0.4979   0.4433  11.5271 (   0    0    6)   0     0.4979   0.4433    8   9
( 3038 1jro_B)  ( 5267 1qap_A)     0.6238   0.8285   7.5378 (   0    1   10)   0     0.6238   0.8285    8   6
( 3038 1jro_B)  ( 5411 1qpo_A)     0.6238   0.7120   7.5643 (   0    1   10)   0     0.6238   0.7120    8   7
( 3038 1jro_B)  ( 6071 1uou_A)     0.7795   0.7795   3.4797 (   1   10   21)   0     0.7795   0.7795    8   8
( 3038 1jro_B)  ( 6309 1vlb_A)     0.7459   0.7459   0.9090 (   1    9   21)   0     0.7459   0.7459    8   8
( 3038 1jro_B)  ( 6547 2tpt  )     0.5708   0.5708   2.8551 (   2   12   21)   0     0.5708   0.5708    8   8

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