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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 2906 1jj2_H)  (  454 1brw_A)     0.4531   0.4780   2.7372 (   1    5   15)   0     0.4531   0.4997   10   8
( 2906 1jj2_H)  ( 1557 1fm0_E)     0.3998   0.3332   8.7038 (   0    2    6)   0     0.4994   0.4164   10  12
( 2906 1jj2_H)  ( 1586 1fo4_A)     0.6000   0.6000   3.2717 (   0    3   15)   0     0.6000   0.6000   10  10
( 2906 1jj2_H)  ( 2906 1jj2_H)     1.0000   1.0000   0.0000 (   0   30   45)   0     1.0000   1.0000   10  10
( 2906 1jj2_H)  ( 3038 1jro_B)     0.6000   0.7499   3.2910 (   0    5   15)   0     0.6000   0.7499   10   8
( 2906 1jj2_H)  ( 4137 1n62_B)     0.6000   0.5000   3.4153 (   0    3   15)   0     0.6000   0.5000   10  12
( 2906 1jj2_H)  ( 4485 1o4u_A)     0.4717   0.4805   6.4738 (   2   10   21)   0     0.4717   0.4805   10   9
( 2906 1jj2_H)  ( 5267 1qap_A)     0.4997   0.8301   6.8008 (   0    0   10)   0     0.4997   0.8301   10   6
( 2906 1jj2_H)  ( 5411 1qpo_A)     0.4998   0.7129   6.6860 (   0    0   10)   0     0.4998   0.7129   10   7
( 2906 1jj2_H)  ( 6071 1uou_A)     0.6000   0.7499   3.3590 (   0    5   15)   0     0.6000   0.7499   10   8
( 2906 1jj2_H)  ( 6309 1vlb_A)     0.6000   0.7499   3.2790 (   0    4   15)   0     0.6000   0.7499   10   8
( 2906 1jj2_H)  ( 6547 2tpt  )     0.4531   0.4780   2.7856 (   1    5   15)   0     0.4531   0.4993   10   8

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