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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 6041 1ukf_A)  (  635 1cmx_A)     0.3077   0.3077   5.9042 (   0    3    6)   0     0.7685   0.7685   13  13
( 6041 1ukf_A)  (  672 1cs8_A)     0.3077   0.2000   7.2936 (   0    4    6)   0     0.3846   0.2828   13  20
( 6041 1ukf_A)  (  688 1cv8  )     0.7670   0.7127   6.8342 (   0   31   45)   0     0.7670   0.7127   13  14
( 6041 1ukf_A)  (  816 1deu_A)     0.6148   0.5331   6.3890 (   0   17   28)   0     0.6148   0.5331   13  15
( 6041 1ukf_A)  (  861 1dki_A)     0.5603   0.4539   5.3434 (   2   15   28)   0     0.5959   0.5409   13  17
( 6041 1ukf_A)  ( 1007 1e2t_A)     0.3846   0.2778   6.5687 (   0    7   10)   0     0.6151   0.4444   13  18
( 6041 1ukf_A)  ( 1272 1euv_A)     0.3845   0.3125   6.8931 (   0    4   10)   0     0.4036   0.3825   13  16
( 6041 1ukf_A)  ( 1993 1gx3_A)     0.3846   0.2632   5.7065 (   0    2   10)   0     0.4609   0.3157   13  19
( 6041 1ukf_A)  ( 2607 1iu4_A)     0.6130   0.4991   5.6111 (   1   18   28)   0     0.6130   0.5154   13  16
( 6041 1ukf_A)  ( 3306 1khq_A)     0.3699   0.3954   5.5313 (   1    6   10)   0     0.6914   0.7487   13  12
( 6041 1ukf_A)  ( 3912 1mdw_A)     0.7672   0.4998   6.6676 (   0   29   45)   0     0.7672   0.4998   13  20
( 6041 1ukf_A)  ( 3914 1me4_A)     0.3840   0.3330  11.9830 (   0    6   10)   0     0.4397   0.4269   13  15
( 6041 1ukf_A)  ( 4188 1nbf_A)     0.3846   0.2000   4.4703 (   0    6   10)   0     0.4181   0.3266   13  25
( 6041 1ukf_A)  ( 4300 1nln_A)     0.3077   0.3077   5.8779 (   0    1    6)   0     0.4026   0.4026   13  13
( 6041 1ukf_A)  ( 5392 1qmy_A)     0.4615   0.4615   5.1379 (   0   11   15)   0     0.6188   0.6188   13  13
( 6041 1ukf_A)  ( 5910 1the_A)     0.3077   0.3077   7.6581 (   0    4    6)   0     0.4749   0.4749   13  13
( 6041 1ukf_A)  ( 5970 1uch  )     0.3077   0.3077   7.6161 (   0    5    6)   0     0.8439   0.8439   13  13
( 6041 1ukf_A)  ( 6041 1ukf_A)     1.0000   1.0000   0.0000 (   0   58   78)   0     1.0000   1.0000   13  13
( 6041 1ukf_A)  ( 6286 1vjj_A)     0.3077   0.1739   6.9733 (   0    2    6)   0     0.3077   0.2541   13  23
( 6041 1ukf_A)  ( 6414 2cb5_A)     0.6671   0.3326   5.4038 (   2   22   36)   0     0.6671   0.3326   13  27
( 6041 1ukf_A)  ( 6571 3gcb  )     0.6114   0.2856   6.7232 (   1   16   28)   0     0.6114   0.2856   13  28

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