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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 6281 1vj7_A)  ( 1399 1f5a_A)     0.5885   0.5286   4.5716 (   2   14   21)   0     0.5885   0.5286   10  12
( 6281 1vj7_A)  ( 2782 1jaj_A)     0.5999   0.3529   4.6888 (   0    8   15)   0     0.5999   0.3547   10  17
( 6281 1vj7_A)  ( 2980 1jms_A)     0.6000   0.4615   3.2005 (   0    8   15)   0     0.6000   0.4615   10  13
( 6281 1vj7_A)  ( 2990 1jn3_A)     0.6999   0.5384   3.0587 (   0   11   21)   0     0.6999   0.5384   10  13
( 6281 1vj7_A)  ( 3370 1kny_A)     0.5736   0.5736   2.0900 (   1    9   15)   0     0.5736   0.5736   10  10
( 6281 1vj7_A)  ( 3938 1miw_A)     0.5656   0.5656   3.0389 (   2   13   21)   0     0.5656   0.5656   10  10
( 6281 1vj7_A)  ( 4332 1no5_A)     0.5000   0.6249   3.4911 (   0    3   10)   0     0.5000   0.6249   10   8
( 6281 1vj7_A)  ( 4788 1ou5_A)     0.4997   0.5551   6.8569 (   0    4   10)   0     0.4997   0.5551   10   9
( 6281 1vj7_A)  ( 5141 1px5_A)     0.5999   0.5000   4.2455 (   0    8   15)   0     0.5999   0.5000   10  12
( 6281 1vj7_A)  ( 5589 1r89_A)     0.6000   0.6000   2.9382 (   0    8   15)   0     0.6000   0.6000   10  10
( 6281 1vj7_A)  ( 5740 1rzt_A)     0.6999   0.4667   3.5439 (   0   10   21)   0     0.6999   0.4667   10  15
( 6281 1vj7_A)  ( 6281 1vj7_A)     1.0000   1.0000   0.0000 (   0   34   45)   0     1.0000   1.0000   10  10
( 6281 1vj7_A)  ( 6336 1wot_A)     0.4000   0.6665   4.3419 (   0    2    6)   0     0.4000   0.6665   10   6

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