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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 5589 1r89_A)  ( 1399 1f5a_A)     0.9971   0.8321   4.5466 (   1   37   45)   0     0.9971   0.8321   10  12
( 5589 1r89_A)  ( 2782 1jaj_A)     0.7962   0.4703   3.9839 (   1   22   28)   0     0.7962   0.5124   10  17
( 5589 1r89_A)  ( 2980 1jms_A)     0.7921   0.6132   3.9840 (   1   18   28)   0     0.7921   0.6132   10  13
( 5589 1r89_A)  ( 2990 1jn3_A)     0.7439   0.5984   3.3118 (   2   21   28)   0     0.7439   0.5984   10  13
( 5589 1r89_A)  ( 3370 1kny_A)     0.5735   0.5735   2.6384 (   1    9   15)   0     0.5999   0.5999   10  10
( 5589 1r89_A)  ( 3938 1miw_A)     0.7956   0.7956   3.7317 (   1   21   28)   0     0.7956   0.7956   10  10
( 5589 1r89_A)  ( 4332 1no5_A)     0.6997   0.8742   4.4841 (   0   13   21)   0     0.6997   0.8742   10   8
( 5589 1r89_A)  ( 4788 1ou5_A)     0.6933   0.7665   5.2430 (   1   16   21)   0     0.6933   0.7665   10   9
( 5589 1r89_A)  ( 5141 1px5_A)     0.6470   0.6075   5.8659 (   4   28   36)   0     0.6470   0.6075   10  12
( 5589 1r89_A)  ( 5589 1r89_A)     1.0000   1.0000   0.0000 (   0   39   45)   0     1.0000   1.0000   10  10
( 5589 1r89_A)  ( 5740 1rzt_A)     0.8194   0.5872   5.1591 (   2   22   36)   0     0.8194   0.5872   10  15
( 5589 1r89_A)  ( 6281 1vj7_A)     0.6000   0.6000   2.9382 (   0    8   15)   0     0.6000   0.6000   10  10
( 5589 1r89_A)  ( 6336 1wot_A)     0.4999   0.8322   5.1974 (   0    7   10)   0     0.4999   0.8322   10   6

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