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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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(  329 1b9o_A)  (    2 153l  )     0.4455   0.4455   4.9415 (   1    5    6)   0     0.4455   0.4455    7   7
(  329 1b9o_A)  (  155 1am7_A)     0.1992   0.1987  11.1129 (   2    4    6)   1     0.1992   0.1987    7   8
(  329 1b9o_A)  (  329 1b9o_A)     1.0000   1.0000   0.0000 (   0   20   21)   0     1.0000   1.0000    7   7
(  329 1b9o_A)  (  591 1chk_A)     0.5709   0.2667   7.0102 (   0    2    6)   0     0.5709   0.2667    7  15
(  329 1b9o_A)  (  967 1dxj_A)   nil
(  329 1b9o_A)  ( 3137 1k28_A)     0.6310   0.3308   6.3976 (   1    8   10)   0     0.6310   0.3308    7  15
(  329 1b9o_A)  ( 5080 1pqm_A)     0.6558   0.3814   7.1776 (   1    9   10)   0     0.6558   0.3814    7  13
(  329 1b9o_A)  ( 5323 1qgi_A)     0.5704   0.2666   8.0794 (   0    3    6)   0     0.5704   0.2666    7  15
(  329 1b9o_A)  ( 5442 1qsa_A)     0.4918   0.3824   2.6477 (   1    6    6)   0     0.4918   0.3824    7  10
(  329 1b9o_A)  ( 5462 1qus_A)     0.3789   0.2172   8.7448 (   1    4    6)   0     0.3789   0.2172    7  18
(  329 1b9o_A)  ( 6580 3lzt  )     0.8294   0.7353   1.0258 (   1   14   15)   0     0.8294   0.7353    7   8

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