------------------------------------------------------------------------------------------------------------------------- Will print the top 5 alignments (based on backbone shifts) for each pairing of chains, as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: score1 [score2] pairings L2ERR {Xbad/Xsig:Xtot} Breaks (score2 is the score from protein2's perspective, not the minimum of the two perspectives as in some earlier printouts.) Recall that "SIMILARITY" refers to similarities over all alignments not just the top ones. ------------------------------------------------------------------------------------------------------------------------- [1692, 302]: Comparing 1g1t_A and 1b6e, based on their crossing files. There are 15 (3 H + 12 S) secondary structure elements in 1g1t_A, of which 9 satisfy the size requirements. There are 10 (3 H + 7 S) secondary structure elements in 1b6e, of which 8 satisfy the size requirements. 1.28581 [ 1.14300] ((1 . 2) (2 . 3) (6 . 4) (7 . 6) (8 . 8) (9 . 9) (10 . 10)) 2.734 {0/19:21} B:0 1.28595 [ 1.14319] ((1 . 2) (2 . 3) (5 . 4) (7 . 6) (8 . 8) (9 . 9) (10 . 10)) 3.372 {0/19:21} B:0 1.50008 [ 1.33345] ((2 . 3) (6 . 4) (7 . 6) (8 . 8) (9 . 9) (10 . 10)) 2.913 {0/14:15} B:0 2.40312 [ 2.20692] ((1 . 2) (2 . 3) (5 . 4) (6 . 6)) 4.382 {1/6:6} B:0 3.49532 [ 3.43753] ((6 . 1) (7 . 2) (9 . 4) (10 . 6)) 10.360 {2/6:6} B:0 SIMILARITY (1/min{score1}): 0.7777 [and 1/min{score2}: 0.8749] [1692, 491]: Comparing 1g1t_A and 1byf_A, based on their crossing files. There are 15 (3 H + 12 S) secondary structure elements in 1g1t_A, of which 9 satisfy the size requirements. There are 10 (3 H + 7 S) secondary structure elements in 1byf_A, of which 7 satisfy the size requirements. 1.28586 [ 1.00031] ((1 . 1) (2 . 2) (4 . 5) (5 . 6) (8 . 8) (9 . 9) (10 . 10)) 3.000 {0/17:21} B:0 4.09664 [ 4.03623] ((1 . 1) (2 . 2) (4 . 5) (7 . 6)) 6.145 {2/5:6} B:0 4.09689 [ 4.03649] ((2 . 5) (5 . 6) (8 . 9) (9 . 10)) 8.769 {2/5:6} B:0 6.02946 [ 6.01084] ((1 . 1) (2 . 2) (4 . 5) (9 . 8)) 4.961 {3/5:6} B:0 5.72840 [ 5.71953] ((2 . 5) (5 . 6) (6 . 10) (8 . 1) (10 . 8)) 8.477 {4/7:10} B:1 SIMILARITY (1/min{score1}): 0.7777 [and 1/min{score2}: 0.9997] [1692, 699]: Comparing 1g1t_A and 1cwv_A, based on their crossing files. There are 15 (3 H + 12 S) secondary structure elements in 1g1t_A, of which 9 satisfy the size requirements. There are 50 (7 H + 43 S) secondary structure elements in 1cwv_A, of which 7 satisfy the size requirements. 1.50005 [ 1.16677] ((1 . 41) (2 . 42) (4 . 45) (5 . 47) (8 . 48) (10 . 50)) 2.580 {0/12:15} B:0 2.25040 [ 1.75085] ((4 . 42) (5 . 43) (8 . 47) (9 . 48)) 5.881 {0/5:6} B:0 2.25380 [ 1.75804] ((4 . 42) (6 . 43) (8 . 47) (9 . 48)) 10.327 {0/5:6} B:0 4.09681 [ 4.03640] ((1 . 41) (2 . 42) (7 . 47) (8 . 50)) 8.171 {2/5:6} B:0 4.09737 [ 4.03699] ((4 . 42) (7 . 43) (8 . 47) (9 . 48)) 10.976 {2/5:6} B:0 SIMILARITY (1/min{score1}): 0.6666 [and 1/min{score2}: 0.8571] [1692, 951]: Comparing 1g1t_A and 1dv8_A, based on their crossing files. There are 15 (3 H + 12 S) secondary structure elements in 1g1t_A, of which 9 satisfy the size requirements. There are 10 (2 H + 8 S) secondary structure elements in 1dv8_A, of which 8 satisfy the size requirements. 1.28573 [ 1.14288] ((1 . 2) (2 . 3) (4 . 5) (5 . 6) (8 . 8) (9 . 9) (10 . 10)) 1.780 {0/18:21} B:0 1.51470 [ 1.35409] ((2 . 3) (4 . 5) (6 . 6) (8 . 8) (9 . 9) (10 . 10)) 3.994 {1/15:15} B:0 2.25245 [ 2.00349] ((4 . 3) (5 . 2) (8 . 6) (10 . 8)) 9.256 {0/5:6} B:1 2.40422 [ 2.20833] ((1 . 6) (2 . 5) (6 . 8) (7 . 9)) 8.123 {1/6:6} B:1 2.40366 [ 2.20761] ((5 . 6) (6 . 9) (8 . 8) (10 . 1)) 6.932 {1/6:6} B:2 SIMILARITY (1/min{score1}): 0.7778 [and 1/min{score2}: 0.8750] [1692, 1073]: Comparing 1g1t_A and 1e87_A, based on their crossing files. There are 15 (3 H + 12 S) secondary structure elements in 1g1t_A, of which 9 satisfy the size requirements. There are 10 (2 H + 8 S) secondary structure elements in 1e87_A, of which 8 satisfy the size requirements. 1.28576 [ 1.14292] ((1 . 2) (2 . 3) (4 . 5) (5 . 6) (8 . 8) (9 . 9) (10 . 10)) 2.253 {0/18:21} B:0 3.49439 [ 3.43655] ((7 . 6) (8 . 8) (9 . 9) (10 . 10)) 5.790 {2/6:6} B:0 3.49507 [ 3.43727] ((2 . 5) (5 . 8) (6 . 9) (7 . 10)) 9.661 {2/6:6} B:0 5.05067 [ 5.03188] ((4 . 3) (8 . 8) (9 . 9) (10 . 10)) 8.874 {3/6:6} B:0 2.25197 [ 2.00281] ((4 . 3) (5 . 2) (8 . 6) (10 . 8)) 8.766 {0/5:6} B:1 SIMILARITY (1/min{score1}): 0.7777 [and 1/min{score2}: 0.8749] [1692, 1148]: Comparing 1g1t_A and 1egi_A, based on their crossing files. There are 15 (3 H + 12 S) secondary structure elements in 1g1t_A, of which 9 satisfy the size requirements. There are 10 (3 H + 7 S) secondary structure elements in 1egi_A, of which 7 satisfy the size requirements. 1.28578 [ 1.00013] ((1 . 2) (2 . 3) (4 . 5) (5 . 6) (8 . 8) (9 . 9) (10 . 10)) 2.417 {0/19:21} B:0 1.50002 [ 1.16671] ((1 . 2) (2 . 3) (4 . 5) (8 . 8) (9 . 9) (10 . 10)) 2.112 {0/14:15} B:0 6.02946 [ 6.01084] ((2 . 3) (4 . 5) (5 . 6) (8 . 9)) 4.887 {3/5:6} B:0 2.25251 [ 1.75533] ((4 . 3) (5 . 2) (8 . 6) (10 . 8)) 9.313 {0/5:6} B:1 2.54130 [ 2.24624] ((1 . 6) (2 . 5) (6 . 8) (7 . 9)) 8.491 {1/5:6} B:1 SIMILARITY (1/min{score1}): 0.7777 [and 1/min{score2}: 0.9999] [1692, 1343]: Comparing 1g1t_A and 1f00_I, based on their crossing files. There are 15 (3 H + 12 S) secondary structure elements in 1g1t_A, of which 9 satisfy the size requirements. There are 34 (5 H + 29 S) secondary structure elements in 1f00_I, of which 10 satisfy the size requirements. 1.28584 [ 1.42866] ((1 . 24) (2 . 26) (4 . 27) (5 . 30) (8 . 32) (9 . 33) (10 . 34)) 2.902 {0/15:21} B:0 1.50003 [ 1.66669] ((1 . 24) (2 . 26) (5 . 30) (8 . 32) (9 . 33) (10 . 34)) 2.338 {0/12:15} B:0 2.25032 [ 2.50024] ((2 . 26) (4 . 27) (5 . 30) (7 . 32)) 5.572 {0/4:6} B:0 2.40334 [ 2.61549] ((1 . 24) (2 . 26) (6 . 30) (7 . 32)) 5.826 {1/6:6} B:0 2.83657 [ 2.97348] ((1 . 25) (2 . 26) (4 . 27) (5 . 30)) 7.522 {1/4:6} B:0 SIMILARITY (1/min{score1}): 0.7777 [and 1/min{score2}: 0.7000] [1692, 1692]: Comparing 1g1t_A and 1g1t_A, based on their crossing files. There are 15 (3 H + 12 S) secondary structure elements in 1g1t_A, of which 9 satisfy the size requirements. There are 15 (3 H + 12 S) secondary structure elements in 1g1t_A, of which 9 satisfy the size requirements. 1.00000 [ 1.00000] ((1 . 1) (2 . 2) (4 . 4) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (10 . 10)) 0.000 {0/34:36} B:0 3.09282 [ 3.09282] ((1 . 1) (2 . 2) (4 . 4) (6 . 7) (8 . 8)) 3.105 {3/10:10} B:0 3.09282 [ 3.09282] ((1 . 1) (2 . 2) (4 . 4) (7 . 6) (8 . 8)) 3.105 {3/10:10} B:0 6.68831 [ 6.68831] ((4 . 2) (8 . 7) (9 . 8) (10 . 9)) 9.881 {4/6:6} B:0 6.68831 [ 6.68831] ((2 . 4) (7 . 8) (8 . 9) (9 . 10)) 9.881 {4/6:6} B:0 SIMILARITY (1/min{score1}): 1.0000 [and 1/min{score2}: 1.0000] [1692, 2014]: Comparing 1g1t_A and 1gz2_A, based on their crossing files. There are 15 (3 H + 12 S) secondary structure elements in 1g1t_A, of which 9 satisfy the size requirements. There are 11 (3 H + 8 S) secondary structure elements in 1gz2_A, of which 9 satisfy the size requirements. 1.50002 [ 1.50002] ((1 . 2) (2 . 3) (4 . 5) (8 . 9) (9 . 10) (10 . 11)) 2.143 {0/14:15} B:0 2.25138 [ 2.25138] ((4 . 3) (5 . 4) (8 . 6) (10 . 9)) 8.011 {0/5:6} B:0 2.25623 [ 2.25623] ((4 . 3) (6 . 4) (8 . 6) (10 . 9)) 11.689 {0/5:6} B:0 2.40523 [ 2.40523] ((5 . 1) (7 . 2) (8 . 4) (10 . 6)) 9.475 {1/6:6} B:0 2.54040 [ 2.54040] ((1 . 2) (2 . 3) (4 . 5) (7 . 6)) 6.035 {1/5:6} B:0 SIMILARITY (1/min{score1}): 0.6667 [and 1/min{score2}: 0.6667] [1692, 2141]: Comparing 1g1t_A and 1h8u_A, based on their crossing files. There are 15 (3 H + 12 S) secondary structure elements in 1g1t_A, of which 9 satisfy the size requirements. There are 10 (2 H + 8 S) secondary structure elements in 1h8u_A, of which 9 satisfy the size requirements. 1.00199 [ 1.00199] ((1 . 1) (2 . 2) (4 . 4) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (10 . 10)) 2.413 {1/34:36} B:0 1.86388 [ 1.86388] ((1 . 1) (2 . 2) (4 . 4) (7 . 7) (9 . 10)) 7.463 {1/9:10} B:0 3.49431 [ 3.49431] ((1 . 1) (2 . 2) (4 . 4) (6 . 7)) 3.820 {2/6:6} B:0 6.68832 [ 6.68832] ((4 . 2) (8 . 7) (9 . 8) (10 . 9)) 10.018 {4/6:6} B:0 2.40353 [ 2.40353] ((1 . 5) (2 . 4) (5 . 8) (7 . 9)) 6.574 {1/6:6} B:1 SIMILARITY (1/min{score1}): 0.9980 [and 1/min{score2}: 0.9980] [1692, 2259]: Comparing 1g1t_A and 1hq8_A, based on their crossing files. There are 15 (3 H + 12 S) secondary structure elements in 1g1t_A, of which 9 satisfy the size requirements. There are 11 (2 H + 9 S) secondary structure elements in 1hq8_A, of which 10 satisfy the size requirements. 1.13153 [ 1.25478] ((1 . 2) (2 . 3) (4 . 5) (5 . 6) (7 . 7) (8 . 9) (9 . 10) (10 . 11)) 3.300 {1/23:28} B:0 1.29983 [ 1.43892] ((1 . 2) (2 . 3) (4 . 5) (5 . 6) (8 . 9) (9 . 10) (10 . 11)) 3.484 {1/17:21} B:0 1.50010 [ 1.66674] ((2 . 3) (6 . 6) (7 . 7) (8 . 9) (9 . 10) (10 . 11)) 3.060 {0/14:15} B:0 2.25004 [ 2.50003] ((1 . 2) (2 . 3) (4 . 5) (7 . 7)) 3.336 {0/4:6} B:0 2.83610 [ 2.97307] ((1 . 2) (2 . 3) (4 . 5) (6 . 7)) 4.419 {1/4:6} B:0 SIMILARITY (1/min{score1}): 0.8838 [and 1/min{score2}: 0.7970] [1692, 2719]: Comparing 1g1t_A and 1j34_A, based on their crossing files. There are 15 (3 H + 12 S) secondary structure elements in 1g1t_A, of which 9 satisfy the size requirements. There are 11 (4 H + 7 S) secondary structure elements in 1j34_A, of which 9 satisfy the size requirements. 1.28593 [ 1.28593] ((1 . 2) (2 . 3) (4 . 5) (5 . 6) (8 . 8) (9 . 10) (10 . 11)) 3.317 {0/18:21} B:0 1.28596 [ 1.28596] ((1 . 2) (2 . 3) (4 . 5) (6 . 6) (8 . 8) (9 . 10) (10 . 11)) 3.406 {0/19:21} B:0 2.25238 [ 2.25238] ((1 . 2) (2 . 3) (4 . 5) (9 . 11)) 9.181 {0/5:6} B:0 3.49481 [ 3.49481] ((2 . 5) (5 . 8) (6 . 10) (7 . 11)) 8.713 {2/6:6} B:0 5.39271 [ 5.39271] ((1 . 2) (2 . 3) (4 . 5) (8 . 6) (9 . 8) (10 . 11)) 3.580 {7/13:15} B:0 SIMILARITY (1/min{score1}): 0.7776 [and 1/min{score2}: 0.7776] [1692, 3079]: Comparing 1g1t_A and 1jwi_B, based on their crossing files. There are 15 (3 H + 12 S) secondary structure elements in 1g1t_A, of which 9 satisfy the size requirements. There are 11 (3 H + 8 S) secondary structure elements in 1jwi_B, of which 9 satisfy the size requirements. 1.28595 [ 1.28595] ((1 . 2) (2 . 3) (4 . 5) (5 . 6) (8 . 9) (9 . 10) (10 . 11)) 3.393 {0/19:21} B:0 1.29344 [ 1.29344] ((1 . 2) (2 . 3) (4 . 5) (6 . 6) (8 . 9) (9 . 10) (10 . 11)) 3.958 {1/20:21} B:0 1.80002 [ 1.80002] ((2 . 3) (4 . 5) (8 . 9) (9 . 10) (10 . 11)) 2.212 {0/10:10} B:0 5.05070 [ 5.05070] ((4 . 3) (8 . 9) (9 . 10) (10 . 11)) 9.218 {3/6:6} B:0 2.40413 [ 2.40413] ((1 . 6) (2 . 5) (5 . 9) (7 . 10)) 7.971 {1/6:6} B:1 SIMILARITY (1/min{score1}): 0.7776 [and 1/min{score2}: 0.7776] [1692, 3104]: Comparing 1g1t_A and 1jzn_A, based on their crossing files. There are 15 (3 H + 12 S) secondary structure elements in 1g1t_A, of which 9 satisfy the size requirements. There are 12 (4 H + 8 S) secondary structure elements in 1jzn_A, of which 10 satisfy the size requirements. 1.28578 [ 1.42862] ((1 . 2) (2 . 3) (4 . 5) (5 . 6) (8 . 9) (9 . 11) (10 . 12)) 2.419 {0/19:21} B:0 1.50276 [ 1.66868] ((1 . 2) (2 . 3) (4 . 5) (5 . 6) (8 . 9) (9 . 12)) 7.032 {0/13:15} B:0 2.25137 [ 2.50100] ((4 . 3) (5 . 4) (8 . 6) (10 . 9)) 7.996 {0/5:6} B:0 2.25631 [ 2.50460] ((4 . 3) (6 . 4) (8 . 6) (10 . 9)) 11.727 {0/5:6} B:0 2.40522 [ 2.61695] ((5 . 1) (7 . 2) (8 . 4) (10 . 6)) 9.463 {1/6:6} B:0 SIMILARITY (1/min{score1}): 0.7777 [and 1/min{score2}: 0.7000] [1692, 3231]: Comparing 1g1t_A and 1k9j_A, based on their crossing files. There are 15 (3 H + 12 S) secondary structure elements in 1g1t_A, of which 9 satisfy the size requirements. There are 11 (3 H + 8 S) secondary structure elements in 1k9j_A, of which 9 satisfy the size requirements. 1.28582 [ 1.28582] ((1 . 2) (2 . 3) (4 . 5) (5 . 6) (8 . 9) (9 . 10) (10 . 11)) 2.749 {0/18:21} B:0 1.28616 [ 1.28616] ((1 . 2) (2 . 3) (4 . 5) (6 . 6) (8 . 9) (9 . 10) (10 . 11)) 3.965 {0/19:21} B:0 2.25095 [ 2.25095] ((2 . 5) (4 . 8) (5 . 9) (7 . 11)) 7.308 {0/4:6} B:0 3.49439 [ 3.49439] ((2 . 3) (4 . 5) (7 . 6) (10 . 11)) 5.707 {2/6:6} B:0 5.05068 [ 5.05068] ((2 . 5) (5 . 6) (8 . 10) (9 . 11)) 8.947 {3/6:6} B:0 SIMILARITY (1/min{score1}): 0.7777 [and 1/min{score2}: 0.7777] [1692, 3290]: Comparing 1g1t_A and 1kg0_C, based on their crossing files. There are 15 (3 H + 12 S) secondary structure elements in 1g1t_A, of which 9 satisfy the size requirements. There are 11 (2 H + 9 S) secondary structure elements in 1kg0_C, of which 8 satisfy the size requirements. 1.28577 [ 1.14294] ((1 . 2) (2 . 3) (4 . 5) (6 . 7) (7 . 8) (8 . 9) (10 . 11)) 2.377 {0/18:21} B:0 1.50001 [ 1.33335] ((1 . 2) (2 . 3) (4 . 5) (6 . 7) (7 . 8) (8 . 9)) 1.707 {0/13:15} B:0 2.54016 [ 2.37851] ((1 . 2) (2 . 3) (4 . 5) (6 . 8)) 4.231 {1/5:6} B:0 2.65333 [ 2.59889] ((1 . 1) (2 . 3) (4 . 5) (8 . 9) (10 . 11)) 3.872 {2/8:10} B:0 SIMILARITY (1/min{score1}): 0.7777 [and 1/min{score2}: 0.8749] [1692, 3380]: Comparing 1g1t_A and 1koe, based on their crossing files. There are 15 (3 H + 12 S) secondary structure elements in 1g1t_A, of which 9 satisfy the size requirements. There are 14 (6 H + 8 S) secondary structure elements in 1koe, of which 11 satisfy the size requirements. 1.74311 [ 1.98312] ((1 . 1) (2 . 2) (5 . 9) (8 . 11) (9 . 13) (10 . 14)) 4.199 {2/14:15} B:0 1.80005 [ 2.20003] ((1 . 1) (5 . 9) (8 . 11) (9 . 13) (10 . 14)) 2.925 {0/9:10} B:0 2.25058 [ 2.75032] ((4 . 10) (6 . 11) (7 . 13) (8 . 14)) 6.453 {0/6:6} B:0 2.25092 [ 2.75050] ((1 . 1) (2 . 2) (4 . 5) (9 . 9)) 7.241 {0/5:6} B:0 2.25192 [ 2.75105] ((2 . 8) (6 . 9) (8 . 11) (9 . 14)) 8.704 {0/6:6} B:0 SIMILARITY (1/min{score1}): 0.5737 [and 1/min{score2}: 0.5043] [1692, 3630]: Comparing 1g1t_A and 1li1_A, based on their crossing files. There are 15 (3 H + 12 S) secondary structure elements in 1g1t_A, of which 9 satisfy the size requirements. There are 26 (6 H + 20 S) secondary structure elements in 1li1_A, of which 9 satisfy the size requirements. 2.83610 [ 2.83610] ((1 . 1) (6 . 3) (8 . 9) (10 . 12)) 4.418 {1/4:6} B:0 2.83619 [ 2.83619] ((5 . 3) (7 . 4) (8 . 9) (10 . 12)) 5.481 {1/4:6} B:0 4.09716 [ 4.09716] ((6 . 1) (8 . 7) (9 . 8) (10 . 9)) 10.199 {2/5:6} B:0 4.31869 [ 4.31869] ((1 . 1) (6 . 3) (7 . 4) (8 . 9) (10 . 12)) 4.128 {3/7:10} B:0 5.05051 [ 5.05051] ((1 . 1) (5 . 3) (7 . 4) (8 . 9)) 4.940 {2/4:6} B:0 SIMILARITY (1/min{score1}): 0.3526 [and 1/min{score2}: 0.3526] [1692, 3631]: Comparing 1g1t_A and 1li1_A, based on their crossing files. There are 15 (3 H + 12 S) secondary structure elements in 1g1t_A, of which 9 satisfy the size requirements. There are 26 (6 H + 20 S) secondary structure elements in 1li1_A, of which 10 satisfy the size requirements. 2.25057 [ 2.50042] ((1 . 13) (8 . 22) (9 . 24) (10 . 26)) 6.424 {0/5:6} B:0 4.09663 [ 4.14463] ((1 . 13) (6 . 15) (8 . 22) (10 . 26)) 5.965 {2/5:6} B:0 4.09676 [ 4.14476] ((5 . 15) (7 . 17) (8 . 22) (10 . 24)) 7.767 {2/5:6} B:0 5.05050 [ 5.07637] ((1 . 13) (7 . 17) (8 . 22) (10 . 26)) 4.022 {2/4:6} B:0 6.02946 [ 6.04472] ((1 . 13) (7 . 20) (8 . 22) (10 . 26)) 5.359 {3/5:6} B:0 SIMILARITY (1/min{score1}): 0.4443 [and 1/min{score2}: 0.3999] [1692, 4527]: Comparing 1g1t_A and 1o7b_T, based on their crossing files. There are 15 (3 H + 12 S) secondary structure elements in 1g1t_A, of which 9 satisfy the size requirements. There are 8 (2 H + 6 S) secondary structure elements in 1o7b_T, of which 6 satisfy the size requirements. 4.09696 [ 4.02005] ((4 . 2) (7 . 6) (8 . 7) (9 . 8)) 9.196 {2/5:6} B:0 6.02958 [ 6.00598] ((4 . 2) (8 . 6) (9 . 7) (10 . 8)) 9.316 {3/5:6} B:0 SIMILARITY (1/min{score1}): 0.2441 [and 1/min{score2}: 0.2488] [1692, 5083]: Comparing 1g1t_A and 1pre_A, based on their crossing files. There are 15 (3 H + 12 S) secondary structure elements in 1g1t_A, of which 9 satisfy the size requirements. There are 37 (13 H + 24 S) secondary structure elements in 1pre_A, of which 8 satisfy the size requirements. 1.50007 [ 1.33344] ((1 . 1) (4 . 4) (5 . 5) (8 . 6) (9 . 8) (10 . 9)) 2.848 {0/13:15} B:0 1.89681 [ 1.73209] ((1 . 1) (4 . 4) (5 . 5) (7 . 8) (10 . 9)) 4.431 {1/8:10} B:0 2.40339 [ 2.20727] ((1 . 1) (4 . 4) (6 . 6) (7 . 8)) 6.067 {1/6:6} B:0 2.54031 [ 2.37869] ((1 . 1) (4 . 4) (5 . 6) (7 . 8)) 5.573 {1/5:6} B:0 2.54095 [ 2.37946] ((1 . 1) (4 . 4) (5 . 6) (7 . 9)) 7.797 {1/5:6} B:0 SIMILARITY (1/min{score1}): 0.6666 [and 1/min{score2}: 0.7499] [1692, 5086]: Comparing 1g1t_A and 1prt_B, based on their crossing files. There are 15 (3 H + 12 S) secondary structure elements in 1g1t_A, of which 9 satisfy the size requirements. There are 17 (4 H + 13 S) secondary structure elements in 1prt_B, of which 7 satisfy the size requirements. 2.54229 [ 2.24768] ((1 . 1) (5 . 5) (6 . 7) (7 . 8)) 9.861 {1/5:6} B:0 2.83619 [ 2.63837] ((4 . 3) (5 . 4) (6 . 5) (7 . 7)) 5.515 {1/4:6} B:0 4.09669 [ 4.03628] ((7 . 1) (8 . 4) (9 . 5) (10 . 7)) 6.957 {2/5:6} B:0 3.49447 [ 3.39511] ((4 . 2) (6 . 5) (7 . 4) (8 . 8)) 6.722 {2/6:6} B:1 5.05055 [ 5.01872] ((5 . 8) (6 . 4) (7 . 5) (10 . 1)) 6.888 {3/6:6} B:2 SIMILARITY (1/min{score1}): 0.3933 [and 1/min{score2}: 0.4449] [1692, 5137]: Comparing 1g1t_A and 1pwb_A, based on their crossing files. There are 15 (3 H + 12 S) secondary structure elements in 1g1t_A, of which 9 satisfy the size requirements. There are 12 (4 H + 8 S) secondary structure elements in 1pwb_A, of which 9 satisfy the size requirements. 1.50004 [ 1.50004] ((1 . 3) (2 . 5) (4 . 7) (8 . 10) (9 . 11) (10 . 12)) 2.419 {0/12:15} B:0 1.53515 [ 1.53515] ((1 . 4) (2 . 5) (4 . 7) (8 . 10) (9 . 11) (10 . 12)) 4.958 {1/12:15} B:0 1.80002 [ 1.80002] ((2 . 5) (4 . 7) (8 . 10) (9 . 11) (10 . 12)) 2.201 {0/9:10} B:0 1.80158 [ 1.80158] ((1 . 3) (2 . 5) (4 . 7) (8 . 10) (9 . 12)) 7.012 {0/8:10} B:0 2.25338 [ 2.25338] ((1 . 4) (2 . 5) (4 . 7) (9 . 12)) 10.026 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.6666 [and 1/min{score2}: 0.6666] [1692, 5294]: Comparing 1g1t_A and 1qdd_A, based on their crossing files. There are 15 (3 H + 12 S) secondary structure elements in 1g1t_A, of which 9 satisfy the size requirements. There are 12 (4 H + 8 S) secondary structure elements in 1qdd_A, of which 9 satisfy the size requirements. 1.28585 [ 1.28585] ((1 . 3) (2 . 4) (4 . 6) (5 . 7) (8 . 9) (9 . 11) (10 . 12)) 2.968 {0/19:21} B:0 3.59934 [ 3.59934] ((1 . 3) (2 . 6) (5 . 7) (8 . 9) (9 . 11) (10 . 12)) 8.572 {5/14:15} B:0 2.25245 [ 2.25245] ((4 . 4) (5 . 3) (8 . 7) (10 . 9)) 9.250 {0/5:6} B:1 2.40384 [ 2.40384] ((1 . 7) (2 . 6) (5 . 9) (7 . 11)) 7.389 {1/6:6} B:1 2.40430 [ 2.40430] ((1 . 7) (2 . 6) (6 . 9) (7 . 11)) 8.267 {1/6:6} B:1 SIMILARITY (1/min{score1}): 0.7777 [and 1/min{score2}: 0.7777] [1692, 5399]: Comparing 1g1t_A and 1qo3_C, based on their crossing files. There are 15 (3 H + 12 S) secondary structure elements in 1g1t_A, of which 9 satisfy the size requirements. There are 12 (4 H + 8 S) secondary structure elements in 1qo3_C, of which 9 satisfy the size requirements. 1.12542 [ 1.12542] ((1 . 2) (2 . 3) (4 . 5) (5 . 6) (7 . 8) (8 . 10) (9 . 11) (10 . 12)) 3.542 {0/24:28} B:0 2.25330 [ 2.25330] ((1 . 2) (2 . 3) (4 . 5) (9 . 12)) 9.971 {0/5:6} B:0 2.42849 [ 2.42849] ((1 . 1) (2 . 3) (4 . 5) (6 . 6) (7 . 8) (8 . 10) (9 . 11) (10 . 12)) 3.267 {6/25:28} B:0 2.54016 [ 2.54016] ((1 . 2) (2 . 3) (4 . 5) (6 . 8)) 4.191 {1/5:6} B:0 3.49487 [ 3.49487] ((2 . 5) (5 . 10) (6 . 11) (7 . 12)) 8.969 {2/6:6} B:0 SIMILARITY (1/min{score1}): 0.8886 [and 1/min{score2}: 0.8886] [1692, 5921]: Comparing 1g1t_A and 1tn3, based on their crossing files. There are 15 (3 H + 12 S) secondary structure elements in 1g1t_A, of which 9 satisfy the size requirements. There are 12 (3 H + 9 S) secondary structure elements in 1tn3, of which 10 satisfy the size requirements. 1.00257 [ 1.11299] ((1 . 2) (2 . 3) (4 . 5) (5 . 6) (6 . 7) (7 . 8) (8 . 10) (9 . 11) (10 . 12)) 2.671 {1/32:36} B:0 2.43037 [ 2.52100] ((1 . 2) (2 . 3) (4 . 5) (6 . 8) (8 . 10)) 4.214 {2/9:10} B:0 3.49533 [ 3.57145] ((5 . 1) (6 . 2) (8 . 6) (10 . 8)) 10.395 {2/6:6} B:0 4.09693 [ 4.14492] ((4 . 3) (6 . 7) (9 . 10) (10 . 11)) 9.031 {2/5:6} B:0 2.25029 [ 2.50021] ((6 . 2) (7 . 12) (8 . 6) (9 . 10)) 5.418 {0/5:6} B:1 SIMILARITY (1/min{score1}): 0.9974 [and 1/min{score2}: 0.8985] [1692, 6043]: Comparing 1g1t_A and 1ukm_B, based on their crossing files. There are 15 (3 H + 12 S) secondary structure elements in 1g1t_A, of which 9 satisfy the size requirements. There are 10 (2 H + 8 S) secondary structure elements in 1ukm_B, of which 9 satisfy the size requirements. 1.28589 [ 1.28589] ((1 . 2) (2 . 3) (4 . 5) (5 . 6) (8 . 8) (9 . 9) (10 . 10)) 3.163 {0/19:21} B:0 1.80003 [ 1.80003] ((2 . 3) (4 . 5) (8 . 8) (9 . 9) (10 . 10)) 2.657 {0/10:10} B:0 1.84190 [ 1.84190] ((1 . 2) (2 . 3) (4 . 5) (6 . 6) (8 . 8)) 5.297 {1/10:10} B:0 2.43069 [ 2.43069] ((1 . 2) (2 . 3) (4 . 5) (5 . 6) (7 . 8)) 6.260 {2/9:10} B:0 3.59932 [ 3.59932] ((1 . 2) (2 . 5) (5 . 6) (8 . 8) (9 . 9) (10 . 10)) 8.519 {5/14:15} B:0 SIMILARITY (1/min{score1}): 0.7777 [and 1/min{score2}: 0.7777] [1692, 6115]: Comparing 1g1t_A and 1uuh_A, based on their crossing files. There are 15 (3 H + 12 S) secondary structure elements in 1g1t_A, of which 9 satisfy the size requirements. There are 15 (4 H + 11 S) secondary structure elements in 1uuh_A, of which 11 satisfy the size requirements. 1.28657 [ 1.57190] ((1 . 3) (2 . 4) (4 . 5) (5 . 6) (8 . 7) (9 . 9) (10 . 10)) 4.678 {0/18:21} B:0 2.25088 [ 2.75048] ((1 . 3) (2 . 4) (6 . 6) (10 . 13)) 7.157 {0/5:6} B:0 2.54327 [ 2.92701] ((1 . 3) (2 . 4) (5 . 6) (9 . 12)) 10.818 {1/5:6} B:0 5.05069 [ 5.11085] ((4 . 4) (8 . 7) (9 . 9) (10 . 10)) 9.052 {3/6:6} B:0 SIMILARITY (1/min{score1}): 0.7773 [and 1/min{score2}: 0.6362] -------------------------------------------------------------------------------------------------------------------------