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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 6636 7mdh_A)  (  320 1b8p_A)     0.9951   0.7488   2.8666 (   1   27   36)   0     0.9951   0.7488    9  12
( 6636 7mdh_A)  ( 1322 1ez4_A)     0.4438   0.3634   9.9431 (   0    3    6)   0     0.4438   0.3984    9  11
( 6636 7mdh_A)  ( 1965 1gv1_A)     0.4520   0.4370   5.4314 (   5   23   28)   0     0.4520   0.4370    9  12
( 6636 7mdh_A)  ( 2329 1hye_A)     0.5522   0.5150   4.9086 (   4   23   28)   0     0.5522   0.5150    9  12
( 6636 7mdh_A)  ( 2331 1hyh_A)     0.5737   0.6384   3.4047 (   2   14   15)   0     0.5737   0.7109    9   7
( 6636 7mdh_A)  ( 3656 1lld_A)     0.6555   0.8206   3.6880 (   1   13   15)   0     0.6555   0.8206    9   7
( 6636 7mdh_A)  ( 4521 1o6z_A)     0.5562   0.5386   3.3869 (   3   18   21)   0     0.5562   0.5419    9  10
( 6636 7mdh_A)  ( 4586 1obb_A)     0.4439   0.2105   9.5046 (   0    5    6)   0     0.4439   0.2105    9  19
( 6636 7mdh_A)  ( 5878 1t2d_A)     0.4440   0.3635   8.8685 (   0    4    6)   0     0.4440   0.4263    9  11
( 6636 7mdh_A)  ( 5943 1u8x_X)     0.5259   0.3106   9.6681 (   1    8   10)   0     0.5259   0.3106    9  16
( 6636 7mdh_A)  ( 6421 2cmd  )     0.6820   0.6639   4.0453 (   4   29   36)   0     0.6820   0.6639    9  10
( 6636 7mdh_A)  ( 6628 6ldh  )     0.5737   0.6384   3.2152 (   2   14   15)   0     0.5737   0.7114    9   7
( 6636 7mdh_A)  ( 6636 7mdh_A)     1.0000   1.0000   0.0000 (   0   30   36)   0     1.0000   1.0000    9   9

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