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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 5943 1u8x_X)  (  320 1b8p_A)     0.5638   0.6555   4.7138 (   5   37   45)   0     0.5638   0.7496   16  12
( 5943 1u8x_X)  ( 1322 1ez4_A)     0.3776   0.4061   4.7880 (   6   25   28)   0     0.3776   0.5043   16  11
( 5943 1u8x_X)  ( 1965 1gv1_A)     0.5452   0.6869   5.4108 (   3   28   36)   0     0.5452   0.6869   16  12
( 5943 1u8x_X)  ( 2329 1hye_A)     0.5452   0.6870   5.2342 (   3   28   36)   0     0.5452   0.6870   16  12
( 5943 1u8x_X)  ( 2331 1hyh_A)     0.3820   0.4691   4.5898 (   4   19   21)   0     0.3820   0.6677   16   7
( 5943 1u8x_X)  ( 3656 1lld_A)     0.4111   0.5819   4.4674 (   3   18   21)   0     0.4111   0.8571   16   7
( 5943 1u8x_X)  ( 4521 1o6z_A)     0.5593   0.8685   6.9836 (   2   30   36)   0     0.5593   0.8685   16  10
( 5943 1u8x_X)  ( 4586 1obb_A)     0.8736   0.7363   5.1133 (   1   79   91)   0     0.8736   0.7363   16  19
( 5943 1u8x_X)  ( 5878 1t2d_A)     0.4327   0.6078   3.7503 (   2   19   21)   0     0.4598   0.6078   16  11
( 5943 1u8x_X)  ( 5943 1u8x_X)     1.0000   1.0000   0.0000 (   0  108  120)   0     1.0000   1.0000   16  16
( 5943 1u8x_X)  ( 6421 2cmd  )     0.5622   0.8969   5.2573 (   1   32   36)   0     0.5622   0.8969   16  10
( 5943 1u8x_X)  ( 6628 6ldh  )     0.4374   0.9967   5.4211 (   0   19   21)   0     0.4374   0.9967   16   7
( 5943 1u8x_X)  ( 6636 7mdh_A)     0.4389   0.5312   6.6719 (   4   22   28)   0     0.4389   0.5312   16   9

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