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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 2331 1hyh_A)  (  320 1b8p_A)     0.9994   0.5833   3.5185 (   0   17   21)   0     0.9994   0.5833    7  12
( 2331 1hyh_A)  ( 1322 1ez4_A)     0.8207   0.5413   3.3344 (   1   13   15)   0     0.8207   0.6078    7  11
( 2331 1hyh_A)  ( 1965 1gv1_A)     0.8184   0.5642   3.3126 (   2   19   21)   0     0.8184   0.5642    7  12
( 2331 1hyh_A)  ( 2329 1hye_A)     0.8089   0.4963   2.5371 (   1   12   15)   0     0.8288   0.5601    7  12
( 2331 1hyh_A)  ( 2331 1hyh_A)     1.0000   1.0000   0.0000 (   0   20   21)   0     1.0000   1.0000    7   7
( 2331 1hyh_A)  ( 3656 1lld_A)     0.9999   0.9999   1.9030 (   0   18   21)   0     0.9999   0.9999    7   7
( 2331 1hyh_A)  ( 4521 1o6z_A)     0.9847   0.6973   3.0056 (   1   20   21)   0     0.9847   0.6973    7  10
( 2331 1hyh_A)  ( 4586 1obb_A)     0.9911   0.3684   6.9980 (   0   19   21)   0     0.9911   0.3684    7  19
( 2331 1hyh_A)  ( 5878 1t2d_A)     0.8183   0.6078   3.4613 (   2   19   21)   0     0.8183   0.6078    7  11
( 2331 1hyh_A)  ( 5943 1u8x_X)     0.6677   0.3693   5.9680 (   2   15   15)   0     0.6677   0.3820    7  16
( 2331 1hyh_A)  ( 6421 2cmd  )     0.9994   0.6999   3.5526 (   0   18   21)   0     0.9994   0.6999    7  10
( 2331 1hyh_A)  ( 6628 6ldh  )     0.9999   0.9999   2.0148 (   0   20   21)   0     0.9999   0.9999    7   7
( 2331 1hyh_A)  ( 6636 7mdh_A)     0.7109   0.5546   8.3615 (   0    9   10)   0     0.7109   0.5737    7   9

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