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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 2329 1hye_A)  (  320 1b8p_A)     0.7169   0.7169   4.5235 (   4   35   45)   0     0.7169   0.7169   12  12
( 2329 1hye_A)  ( 1322 1ez4_A)     0.8264   0.8985   2.7657 (   2   39   45)   0     0.8264   0.8985   12  11
( 2329 1hye_A)  ( 1965 1gv1_A)     0.9166   0.9166   2.0902 (   0   50   55)   0     0.9166   0.9166   12  12
( 2329 1hye_A)  ( 2329 1hye_A)     1.0000   1.0000   0.0000 (   0   59   66)   0     1.0000   1.0000   12  12
( 2329 1hye_A)  ( 2331 1hyh_A)     0.5601   0.7933   2.7782 (   2   18   21)   0     0.5601   0.8288   12   7
( 2329 1hye_A)  ( 3656 1lld_A)     0.5601   0.7933   2.7431 (   2   18   21)   0     0.5601   0.8089   12   7
( 2329 1hye_A)  ( 4521 1o6z_A)     0.8328   0.9987   2.7576 (   1   39   45)   0     0.8328   0.9987   12  10
( 2329 1hye_A)  ( 4586 1obb_A)     0.6192   0.4542   6.1048 (   4   29   36)   0     0.6192   0.4542   12  19
( 2329 1hye_A)  ( 5878 1t2d_A)     0.7494   0.8173   2.1511 (   1   32   36)   0     0.7494   0.8173   12  11
( 2329 1hye_A)  ( 5943 1u8x_X)     0.6870   0.5452   5.2342 (   3   28   36)   0     0.6870   0.5452   12  16
( 2329 1hye_A)  ( 6421 2cmd  )     0.6407   0.6945   3.5734 (   4   31   36)   0     0.6407   0.6945   12  10
( 2329 1hye_A)  ( 6628 6ldh  )     0.5601   0.7932   3.4076 (   2   18   21)   0     0.5601   0.8088   12   7
( 2329 1hye_A)  ( 6636 7mdh_A)     0.5150   0.5522   4.9086 (   4   23   28)   0     0.5150   0.5522   12   9

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