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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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(  432 1bo1_A)  (  432 1bo1_A)     1.0000   1.0000   0.0000 (   0  156  190)   0     1.0000   1.0000   20  20
(  432 1bo1_A)  ( 3441 1kut_A)     0.3000   0.3529   8.0239 (   0   10   15)   0     0.4978   0.5833   20  17
(  432 1bo1_A)  ( 4587 1obd_A)     0.2000   0.2500   5.2099 (   0    5    6)   0     0.2481   0.3070   20  16

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