------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 832 1dgs_A) ( 10 1a0i ) 0.5346 0.5515 4.0454 ( 7 48 66) 0 0.5628 0.5851 20 19 ( 832 1dgs_A) ( 85 1a9x_A) 0.2992 0.3320 14.1711 ( 1 11 15) 0 0.6007 0.6596 20 18 ( 832 1dgs_A) ( 87 1a9x_A) 0.2495 0.2625 14.5246 ( 1 9 10) 0 0.6376 0.6683 20 19 ( 832 1dgs_A) ( 305 1b6r_A) 0.2500 0.3125 6.4635 ( 0 6 10) 0 0.6213 0.7373 20 16 ( 832 1dgs_A) ( 619 1ckm_A) 0.2500 0.2778 4.6173 ( 0 5 10) 0 0.4333 0.4573 20 18 ( 832 1dgs_A) ( 832 1dgs_A) 1.0000 1.0000 0.0000 ( 0 161 190) 0 1.0000 1.0000 20 20 ( 832 1dgs_A) ( 948 1dv1_A) 0.2500 0.3846 5.6361 ( 0 9 10) 0 0.3118 0.3846 20 13 ( 832 1dgs_A) ( 1032 1e4e_A) 0.2412 0.3157 10.4007 ( 1 4 10) 0 0.4000 0.5714 20 14 ( 832 1dgs_A) ( 1159 1ehi_A) 0.2800 0.3134 10.1755 ( 3 12 15) 0 0.5873 0.6786 20 17 ( 832 1dgs_A) ( 1265 1euc_B) 0.2500 0.2500 8.6109 ( 0 7 10) 0 0.5484 0.5484 20 20 ( 832 1dgs_A) ( 1637 1fvi_A) 0.5272 0.7087 4.1219 ( 5 42 55) 0 0.5272 0.7591 20 13 ( 832 1dgs_A) ( 1933 1gsa ) 0.2490 0.3094 9.1877 ( 1 7 10) 0 0.5452 0.6732 20 16 ( 832 1dgs_A) ( 1941 1gso_A) 0.2500 0.2940 10.5708 ( 0 4 10) 0 0.6169 0.6975 20 17 ( 832 1dgs_A) ( 2423 1i7n_A) 0.2974 0.4139 11.3699 ( 1 7 15) 0 0.5433 0.7495 20 14 ( 832 1dgs_A) ( 2553 1iow ) 0.2494 0.2927 10.5998 ( 1 8 10) 0 0.5953 0.6954 20 17 ( 832 1dgs_A) ( 3252 1kbl_A) 0.2490 0.1997 8.7088 ( 1 7 10) 0 0.5498 0.4399 20 25 ( 832 1dgs_A) ( 3323 1kjq_A) 0.2995 0.3736 8.2177 ( 1 11 15) 0 0.4444 0.4600 20 16 ( 832 1dgs_A) ( 3775 1m0w_A) 0.2000 0.1481 5.6750 ( 0 3 6) 0 0.5172 0.3993 20 27 ( 832 1dgs_A) ( 4858 1p16_A) 0.2481 0.3067 12.8881 ( 1 6 10) 0 0.5176 0.6208 20 16 ( 832 1dgs_A) ( 5773 1s68_A) 0.5774 0.6587 3.7216 ( 5 47 66) 0 0.5829 0.6587 20 17 ( 832 1dgs_A) ( 5968 1uc8_A) 0.2500 0.3844 8.7142 ( 0 6 10) 0 0.5302 0.7682 20 13 ( 832 1dgs_A) ( 6468 2hgs_A) 0.2000 0.1538 4.6892 ( 0 5 6) 0 0.4478 0.3679 20 26 ( 832 1dgs_A) ( 6529 2scu_B) 0.2996 0.3152 6.7667 ( 1 11 15) 0 0.5485 0.5770 20 19 -------------------------------------------------------------------------------------------------------------------------