------------------------------------------------------------------------------------------------------------------------- Will print the top 5 alignments (based on backbone shifts) for each pairing of chains, as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: score1 [score2] pairings L2ERR {Xbad/Xsig:Xtot} Breaks (score2 is the score from protein2's perspective, not the minimum of the two perspectives as in some earlier printouts.) Recall that "SIMILARITY" refers to similarities over all alignments not just the top ones. ------------------------------------------------------------------------------------------------------------------------- [3775, 10]: Comparing 1m0w_A and 1a0i, based on their crossing files. There are 43 (20 H + 23 S) secondary structure elements in 1m0w_A, of which 27 satisfy the size requirements. There are 29 (8 H + 21 S) secondary structure elements in 1a0i, of which 19 satisfy the size requirements. 6.75001 [ 4.75003] ((34 . 2) (36 . 3) (37 . 4) (38 . 5)) 5.558 {0/4:6} B:0 6.75002 [ 4.75007] ((27 . 14) (29 . 16) (32 . 18) (36 . 21)) 6.692 {0/3:6} B:0 6.75005 [ 4.75014] ((7 . 6) (8 . 8) (10 . 9) (11 . 11)) 7.979 {0/5:6} B:0 6.75007 [ 4.75020] ((7 . 10) (9 . 12) (11 . 15) (12 . 17)) 8.673 {0/4:6} B:0 6.75011 [ 4.75031] ((28 . 6) (32 . 9) (36 . 11) (41 . 16)) 9.690 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.3580 [and 1/min{score2}: 0.4684] [3775, 85]: Comparing 1m0w_A and 1a9x_A, based on their crossing files. There are 43 (20 H + 23 S) secondary structure elements in 1m0w_A, of which 27 satisfy the size requirements. There are 84 (46 H + 38 S) secondary structure elements in 1a9x_A, of which 18 satisfy the size requirements. 5.40002 [ 3.60006] ((29 . 14) (32 . 16) (36 . 17) (39 . 20) (40 . 21)) 5.155 {0/6:10} B:0 5.41223 [ 3.64074] ((28 . 13) (32 . 16) (36 . 17) (39 . 20) (40 . 21)) 5.727 {1/6:10} B:0 5.41246 [ 3.64149] ((30 . 13) (32 . 14) (36 . 17) (39 . 20) (40 . 21)) 10.134 {1/6:10} B:0 6.75014 [ 4.50047] ((30 . 13) (32 . 14) (40 . 21) (43 . 23)) 10.310 {0/5:6} B:0 6.75016 [ 4.50053] ((29 . 16) (30 . 18) (39 . 23) (42 . 26)) 10.607 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.4363 [and 1/min{score2}: 0.5300] [3775, 87]: Comparing 1m0w_A and 1a9x_A, based on their crossing files. There are 43 (20 H + 23 S) secondary structure elements in 1m0w_A, of which 27 satisfy the size requirements. There are 84 (46 H + 38 S) secondary structure elements in 1a9x_A, of which 19 satisfy the size requirements. 5.42530 [ 3.87110] ((8 . 52) (10 . 62) (30 . 68) (39 . 69) (40 . 71)) 7.563 {1/5:10} B:0 6.75008 [ 4.75022] ((30 . 52) (32 . 53) (39 . 59) (40 . 60)) 8.907 {0/3:6} B:0 6.75020 [ 4.75058] ((9 . 52) (30 . 54) (39 . 64) (40 . 65)) 11.314 {0/0:6} B:0 6.75026 [ 4.75076] ((30 . 54) (37 . 60) (39 . 62) (42 . 65)) 12.082 {0/5:6} B:0 6.75032 [ 4.75091] ((30 . 54) (37 . 60) (39 . 62) (43 . 65)) 12.647 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.4639 [and 1/min{score2}: 0.5473] [3775, 305]: Comparing 1m0w_A and 1b6r_A, based on their crossing files. There are 43 (20 H + 23 S) secondary structure elements in 1m0w_A, of which 27 satisfy the size requirements. There are 31 (15 H + 16 S) secondary structure elements in 1b6r_A, of which 16 satisfy the size requirements. 6.75002 [ 4.00011] ((34 . 8) (36 . 9) (41 . 16) (42 . 18)) 6.552 {0/5:6} B:0 6.75003 [ 4.00013] ((32 . 9) (39 . 16) (40 . 17) (42 . 19)) 6.789 {0/5:6} B:0 6.75003 [ 4.00016] ((29 . 12) (32 . 15) (39 . 21) (40 . 22)) 7.233 {0/3:6} B:0 6.75008 [ 4.00040] ((27 . 14) (29 . 16) (34 . 20) (36 . 21)) 9.035 {0/3:6} B:0 6.75011 [ 4.00055] ((30 . 8) (32 . 9) (39 . 16) (40 . 18)) 9.790 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.4605 [and 1/min{score2}: 0.7232] [3775, 619]: Comparing 1m0w_A and 1ckm_A, based on their crossing files. There are 43 (20 H + 23 S) secondary structure elements in 1m0w_A, of which 27 satisfy the size requirements. There are 27 (7 H + 20 S) secondary structure elements in 1ckm_A, of which 18 satisfy the size requirements. 6.75004 [ 4.50015] ((29 . 8) (32 . 11) (36 . 12) (41 . 18)) 7.676 {0/2:6} B:0 6.75005 [ 4.50019] ((14 . 3) (27 . 14) (32 . 18) (36 . 20)) 8.159 {0/5:6} B:0 6.75006 [ 4.50019] ((30 . 3) (36 . 7) (39 . 11) (40 . 12)) 8.213 {0/3:6} B:0 6.75008 [ 4.50028] ((28 . 3) (30 . 5) (39 . 11) (40 . 12)) 9.036 {0/1:6} B:0 6.75009 [ 4.50032] ((29 . 7) (32 . 9) (36 . 12) (42 . 18)) 9.336 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.2512 [and 1/min{score2}: 0.3308] [3775, 832]: Comparing 1m0w_A and 1dgs_A, based on their crossing files. There are 43 (20 H + 23 S) secondary structure elements in 1m0w_A, of which 27 satisfy the size requirements. There are 44 (25 H + 19 S) secondary structure elements in 1dgs_A, of which 20 satisfy the size requirements. 6.75001 [ 5.00003] ((28 . 18) (29 . 19) (32 . 21) (36 . 23)) 5.675 {0/3:6} B:0 6.75002 [ 5.00004] ((27 . 18) (29 . 19) (32 . 21) (36 . 23)) 6.041 {0/3:6} B:0 6.75007 [ 5.00017] ((30 . 15) (32 . 17) (39 . 21) (40 . 23)) 8.612 {0/3:6} B:0 6.75009 [ 5.00022] ((9 . 7) (10 . 9) (11 . 10) (14 . 14)) 9.188 {0/4:6} B:0 6.75020 [ 5.00050] ((26 . 12) (30 . 15) (34 . 16) (37 . 19)) 11.335 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.3993 [and 1/min{score2}: 0.5172] [3775, 948]: Comparing 1m0w_A and 1dv1_A, based on their crossing files. There are 43 (20 H + 23 S) secondary structure elements in 1m0w_A, of which 27 satisfy the size requirements. There are 37 (18 H + 19 S) secondary structure elements in 1dv1_A, of which 13 satisfy the size requirements. 6.75022 [ 3.25200] ((28 . 14) (37 . 19) (38 . 20) (40 . 22)) 11.587 {0/4:6} B:0 6.78158 [ 3.50364] ((1 . 13) (10 . 19) (11 . 20) (12 . 21)) 7.894 {1/4:6} B:0 6.84824 [ 3.91566] ((28 . 13) (34 . 14) (35 . 16) (39 . 19)) 7.894 {2/6:6} B:0 6.94920 [ 4.37892] ((34 . 14) (35 . 16) (39 . 18) (40 . 19)) 9.267 {2/5:6} B:0 6.95021 [ 4.38298] ((32 . 19) (35 . 21) (37 . 22) (38 . 23)) 17.638 {2/5:6} B:0 SIMILARITY (1/min{score1}): 0.4073 [and 1/min{score2}: 0.8435] [3775, 1032]: Comparing 1m0w_A and 1e4e_A, based on their crossing files. There are 43 (20 H + 23 S) secondary structure elements in 1m0w_A, of which 27 satisfy the size requirements. There are 28 (11 H + 17 S) secondary structure elements in 1e4e_A, of which 14 satisfy the size requirements. 6.75003 [ 3.50021] ((34 . 11) (36 . 12) (39 . 15) (42 . 20)) 6.931 {0/5:6} B:0 6.75007 [ 3.50050] ((30 . 11) (32 . 12) (39 . 18) (42 . 23)) 8.672 {0/5:6} B:0 6.75008 [ 3.50060] ((1 . 11) (6 . 14) (10 . 20) (12 . 24)) 9.068 {0/5:6} B:0 6.75014 [ 3.50098] ((28 . 16) (29 . 17) (39 . 25) (40 . 26)) 10.255 {0/2:6} B:0 6.75020 [ 3.50144] ((34 . 11) (36 . 12) (40 . 17) (41 . 18)) 11.285 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.3701 [and 1/min{score2}: 0.7072] [3775, 1159]: Comparing 1m0w_A and 1ehi_A, based on their crossing files. There are 43 (20 H + 23 S) secondary structure elements in 1m0w_A, of which 27 satisfy the size requirements. There are 26 (14 H + 12 S) secondary structure elements in 1ehi_A, of which 17 satisfy the size requirements. 4.50002 [ 2.83342] ((29 . 11) (32 . 14) (36 . 15) (39 . 18) (40 . 19) (42 . 21)) 4.834 {0/11:15} B:0 6.75004 [ 4.25015] ((34 . 10) (36 . 11) (41 . 18) (42 . 19)) 7.464 {0/4:6} B:0 6.75008 [ 4.25030] ((30 . 10) (32 . 11) (39 . 18) (40 . 19)) 8.851 {0/3:6} B:0 6.75008 [ 4.25031] ((8 . 20) (10 . 23) (11 . 24) (14 . 26)) 8.864 {0/6:6} B:0 6.75013 [ 4.25053] ((28 . 16) (29 . 17) (39 . 23) (40 . 24)) 10.175 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.5013 [and 1/min{score2}: 0.7193] [3775, 1265]: Comparing 1m0w_A and 1euc_B, based on their crossing files. There are 43 (20 H + 23 S) secondary structure elements in 1m0w_A, of which 27 satisfy the size requirements. There are 36 (16 H + 20 S) secondary structure elements in 1euc_B, of which 20 satisfy the size requirements. 6.75001 [ 5.00002] ((29 . 2) (32 . 4) (35 . 7) (39 . 11)) 5.029 {0/5:6} B:0 6.75010 [ 5.00025] ((26 . 1) (36 . 10) (37 . 11) (38 . 13)) 9.503 {0/3:6} B:0 6.75014 [ 5.00033] ((28 . 7) (29 . 8) (40 . 19) (42 . 21)) 10.233 {0/4:6} B:0 6.75023 [ 5.00058] ((6 . 2) (7 . 3) (11 . 10) (14 . 17)) 11.731 {0/2:6} B:0 6.75030 [ 5.00073] ((28 . 7) (29 . 8) (40 . 19) (41 . 20)) 12.457 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.4464 [and 1/min{score2}: 0.5353] [3775, 1637]: Comparing 1m0w_A and 1fvi_A, based on their crossing files. There are 43 (20 H + 23 S) secondary structure elements in 1m0w_A, of which 27 satisfy the size requirements. There are 23 (8 H + 15 S) secondary structure elements in 1fvi_A, of which 13 satisfy the size requirements. 6.75008 [ 3.25070] ((32 . 7) (36 . 9) (40 . 13) (43 . 16)) 8.899 {0/4:6} B:0 6.75630 [ 3.30510] ((26 . 8) (29 . 9) (30 . 10) (32 . 12)) 7.342 {1/6:6} B:0 6.75630 [ 3.30510] ((26 . 6) (29 . 9) (30 . 10) (32 . 12)) 7.367 {1/6:6} B:0 6.76298 [ 3.36080] ((32 . 7) (35 . 8) (36 . 9) (41 . 13)) 5.163 {1/5:6} B:0 6.78154 [ 3.50336] ((32 . 4) (34 . 6) (36 . 7) (42 . 13)) 5.112 {1/4:6} B:0 SIMILARITY (1/min{score1}): 0.3545 [and 1/min{score2}: 0.5260] [3775, 1933]: Comparing 1m0w_A and 1gsa, based on their crossing files. There are 43 (20 H + 23 S) secondary structure elements in 1m0w_A, of which 27 satisfy the size requirements. There are 31 (14 H + 17 S) secondary structure elements in 1gsa, of which 16 satisfy the size requirements. 5.40003 [ 3.20016] ((29 . 15) (32 . 17) (36 . 18) (39 . 22) (40 . 24)) 6.074 {0/7:10} B:0 5.40005 [ 3.20023] ((29 . 15) (32 . 17) (35 . 19) (39 . 22) (40 . 24)) 6.652 {0/7:10} B:0 6.75002 [ 4.00009] ((34 . 14) (35 . 16) (36 . 17) (41 . 22)) 6.303 {0/4:6} B:0 6.75004 [ 4.00020] ((36 . 18) (39 . 22) (40 . 24) (42 . 26)) 7.595 {0/5:6} B:0 6.75010 [ 4.00046] ((34 . 14) (35 . 16) (36 . 17) (40 . 22)) 9.398 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.5001 [and 1/min{score2}: 0.7137] [3775, 1941]: Comparing 1m0w_A and 1gso_A, based on their crossing files. There are 43 (20 H + 23 S) secondary structure elements in 1m0w_A, of which 27 satisfy the size requirements. There are 37 (16 H + 21 S) secondary structure elements in 1gso_A, of which 17 satisfy the size requirements. 5.40047 [ 3.40186] ((30 . 12) (32 . 13) (41 . 20) (42 . 21) (43 . 22)) 11.773 {0/8:10} B:0 6.75007 [ 4.25028] ((1 . 12) (3 . 14) (4 . 15) (12 . 24)) 8.632 {0/3:6} B:0 6.75016 [ 4.25063] ((34 . 12) (36 . 13) (41 . 19) (43 . 20)) 10.632 {0/5:6} B:0 6.75017 [ 4.25067] ((34 . 12) (36 . 13) (39 . 16) (43 . 20)) 10.768 {0/4:6} B:0 6.75021 [ 4.25084] ((12 . 12) (14 . 17) (28 . 27) (30 . 28)) 11.398 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.4667 [and 1/min{score2}: 0.6947] [3775, 2423]: Comparing 1m0w_A and 1i7n_A, based on their crossing files. There are 43 (20 H + 23 S) secondary structure elements in 1m0w_A, of which 27 satisfy the size requirements. There are 27 (10 H + 17 S) secondary structure elements in 1i7n_A, of which 14 satisfy the size requirements. 6.75005 [ 3.50034] ((28 . 12) (30 . 13) (32 . 14) (43 . 22)) 7.882 {0/5:6} B:0 6.75005 [ 3.50038] ((26 . 13) (29 . 16) (34 . 18) (39 . 22)) 8.086 {0/5:6} B:0 6.75005 [ 3.50038] ((34 . 13) (36 . 14) (39 . 17) (41 . 20)) 8.086 {0/4:6} B:0 6.75007 [ 3.50054] ((28 . 12) (30 . 13) (32 . 14) (42 . 22)) 8.807 {0/5:6} B:0 6.75008 [ 3.50060] ((34 . 13) (36 . 14) (41 . 20) (42 . 21)) 9.058 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.4444 [and 1/min{score2}: 0.8559] [3775, 2553]: Comparing 1m0w_A and 1iow, based on their crossing files. There are 43 (20 H + 23 S) secondary structure elements in 1m0w_A, of which 27 satisfy the size requirements. There are 25 (12 H + 13 S) secondary structure elements in 1iow, of which 17 satisfy the size requirements. 5.40009 [ 3.40036] ((30 . 10) (32 . 12) (36 . 13) (39 . 16) (40 . 18)) 7.821 {0/6:10} B:0 6.75003 [ 4.25010] ((28 . 8) (30 . 10) (32 . 12) (36 . 13)) 6.769 {0/4:6} B:0 6.75004 [ 4.25015] ((36 . 13) (39 . 16) (40 . 18) (42 . 20)) 7.379 {0/4:6} B:0 6.75011 [ 4.25045] ((30 . 8) (32 . 9) (40 . 18) (43 . 20)) 9.767 {0/4:6} B:0 6.75012 [ 4.25046] ((6 . 9) (10 . 13) (12 . 21) (42 . 23)) 9.827 {0/6:6} B:0 SIMILARITY (1/min{score1}): 0.4414 [and 1/min{score2}: 0.6774] [3775, 3252]: Comparing 1m0w_A and 1kbl_A, based on their crossing files. There are 43 (20 H + 23 S) secondary structure elements in 1m0w_A, of which 27 satisfy the size requirements. There are 75 (44 H + 31 S) secondary structure elements in 1kbl_A, of which 25 satisfy the size requirements. 6.75010 [ 6.25012] ((30 . 4) (32 . 5) (39 . 8) (40 . 9)) 9.406 {0/3:6} B:0 6.75013 [ 6.25016] ((28 . 3) (30 . 4) (32 . 5) (36 . 8)) 10.024 {0/4:6} B:0 6.75014 [ 6.25018] ((11 . 8) (27 . 21) (28 . 23) (35 . 28)) 10.359 {0/5:6} B:0 6.75014 [ 6.25018] ((9 . 3) (29 . 19) (32 . 20) (35 . 23)) 10.371 {0/5:6} B:0 6.75015 [ 6.25019] ((8 . 4) (14 . 11) (30 . 23) (34 . 24)) 10.549 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.3970 [and 1/min{score2}: 0.4101] [3775, 3323]: Comparing 1m0w_A and 1kjq_A, based on their crossing files. There are 43 (20 H + 23 S) secondary structure elements in 1m0w_A, of which 27 satisfy the size requirements. There are 36 (14 H + 22 S) secondary structure elements in 1kjq_A, of which 16 satisfy the size requirements. 6.75001 [ 4.00004] ((29 . 12) (32 . 14) (36 . 15) (39 . 19)) 4.959 {0/4:6} B:0 6.75001 [ 4.00004] ((29 . 12) (32 . 14) (35 . 16) (39 . 19)) 5.014 {0/4:6} B:0 6.75004 [ 4.00021] ((32 . 14) (36 . 15) (39 . 19) (40 . 21)) 7.712 {0/4:6} B:0 6.75033 [ 4.00160] ((34 . 13) (39 . 18) (40 . 19) (43 . 21)) 12.809 {0/4:6} B:0 6.76310 [ 4.06169] ((30 . 11) (36 . 15) (39 . 19) (42 . 22)) 10.145 {1/5:6} B:0 SIMILARITY (1/min{score1}): 0.4816 [and 1/min{score2}: 0.7499] [3775, 3775]: Comparing 1m0w_A and 1m0w_A, based on their crossing files. There are 43 (20 H + 23 S) secondary structure elements in 1m0w_A, of which 27 satisfy the size requirements. There are 43 (20 H + 23 S) secondary structure elements in 1m0w_A, of which 27 satisfy the size requirements. 1.00000 [ 1.00000] ((1 . 1) (3 . 3) (4 . 4) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (10 . 10) (11 . 11) (12 . 12) (14 . 14) (26 . 26) (27 . 27) (28 . 28) (29 . 29) (30 . 30) (32 . 32) (34 . 34) (35 . 35) (36 . 36) (37 . 37) (38 . 38) (39 . 39) (40 . 40) (41 . 41) (42 . 42) (43 . 43)) 0.000 {0/295:351} B:0 1.03846 [ 1.03846] ((1 . 1) (3 . 3) (4 . 4) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (10 . 10) (11 . 11) (12 . 12) (14 . 14) (26 . 26) (27 . 27) (28 . 28) (29 . 29) (30 . 30) (32 . 32) (34 . 34) (35 . 35) (36 . 36) (37 . 37) (38 . 38) (39 . 39) (40 . 40) (41 . 41) (42 . 42)) 0.000 {0/272:325} B:0 3.00171 [ 3.00171] ((1 . 1) (3 . 3) (7 . 7) (12 . 12) (14 . 14) (29 . 29) (30 . 30) (32 . 32) (40 . 41)) 10.214 {1/27:36} B:0 3.00171 [ 3.00171] ((1 . 1) (3 . 3) (7 . 7) (12 . 12) (14 . 14) (29 . 29) (30 . 30) (32 . 32) (41 . 40)) 10.214 {1/27:36} B:0 4.50000 [ 4.50000] ((1 . 1) (3 . 3) (7 . 7) (12 . 12) (14 . 14) (29 . 32)) 3.258 {0/9:15} B:0 SIMILARITY (1/min{score1}): 1.0000 [and 1/min{score2}: 1.0000] [3775, 4858]: Comparing 1m0w_A and 1p16_A, based on their crossing files. There are 43 (20 H + 23 S) secondary structure elements in 1m0w_A, of which 27 satisfy the size requirements. There are 32 (11 H + 21 S) secondary structure elements in 1p16_A, of which 16 satisfy the size requirements. 6.75005 [ 4.00022] ((14 . 2) (27 . 12) (32 . 19) (36 . 21)) 7.786 {0/5:6} B:0 6.75009 [ 4.00043] ((28 . 2) (30 . 4) (39 . 9) (40 . 10)) 9.220 {0/1:6} B:0 6.75012 [ 4.00060] ((29 . 7) (32 . 9) (36 . 10) (40 . 15)) 10.000 {0/4:6} B:0 6.75018 [ 4.00085] ((32 . 9) (41 . 19) (42 . 20) (43 . 21)) 10.914 {0/3:6} B:0 6.76303 [ 4.06135] ((34 . 13) (36 . 15) (38 . 20) (39 . 21)) 8.284 {1/5:6} B:0 SIMILARITY (1/min{score1}): 0.3104 [and 1/min{score2}: 0.4982] [3775, 5773]: Comparing 1m0w_A and 1s68_A, based on their crossing files. There are 43 (20 H + 23 S) secondary structure elements in 1m0w_A, of which 27 satisfy the size requirements. There are 21 (8 H + 13 S) secondary structure elements in 1s68_A, of which 17 satisfy the size requirements. 6.75007 [ 4.25030] ((30 . 2) (32 . 3) (39 . 9) (40 . 11)) 8.789 {0/2:6} B:0 6.75010 [ 4.25039] ((29 . 4) (36 . 9) (39 . 11) (40 . 12)) 9.404 {0/2:6} B:0 6.75011 [ 4.25043] ((30 . 2) (32 . 3) (39 . 9) (41 . 11)) 9.633 {0/2:6} B:0 6.75012 [ 4.25048] ((30 . 2) (32 . 3) (39 . 9) (41 . 12)) 9.931 {0/3:6} B:0 6.75014 [ 4.25056] ((37 . 5) (40 . 9) (42 . 10) (43 . 11)) 10.305 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.2744 [and 1/min{score2}: 0.3411] [3775, 5968]: Comparing 1m0w_A and 1uc8_A, based on their crossing files. There are 43 (20 H + 23 S) secondary structure elements in 1m0w_A, of which 27 satisfy the size requirements. There are 24 (11 H + 13 S) secondary structure elements in 1uc8_A, of which 13 satisfy the size requirements. 6.75010 [ 3.25089] ((30 . 11) (32 . 12) (39 . 17) (40 . 18)) 9.466 {0/3:6} B:0 6.75017 [ 3.25148] ((29 . 18) (32 . 21) (34 . 23) (35 . 24)) 10.742 {0/4:6} B:0 6.78154 [ 3.50337] ((29 . 12) (32 . 14) (36 . 16) (37 . 17)) 5.282 {1/4:6} B:0 6.78154 [ 3.50337] ((29 . 12) (32 . 14) (36 . 16) (38 . 18)) 5.394 {1/4:6} B:0 6.78172 [ 3.50464] ((35 . 13) (36 . 14) (39 . 16) (40 . 17)) 11.089 {1/4:6} B:0 SIMILARITY (1/min{score1}): 0.4559 [and 1/min{score2}: 0.8336] [3775, 6468]: Comparing 1m0w_A and 2hgs_A, based on their crossing files. There are 43 (20 H + 23 S) secondary structure elements in 1m0w_A, of which 27 satisfy the size requirements. There are 42 (21 H + 21 S) secondary structure elements in 2hgs_A, of which 26 satisfy the size requirements. 1.25171 [ 1.20905] ((1 . 2) (4 . 4) (7 . 7) (8 . 8) (9 . 9) (10 . 10) (11 . 11) (12 . 13) (14 . 15) (26 . 27) (27 . 28) (28 . 29) (29 . 30) (30 . 31) (32 . 33) (34 . 34) (35 . 35) (36 . 36) (37 . 37) (39 . 38) (40 . 40) (42 . 41)) 4.301 {12/184:231} B:0 1.74111 [ 1.72585] ((1 . 2) (4 . 4) (7 . 7) (8 . 8) (9 . 9) (10 . 10) (11 . 11) (12 . 13) (14 . 15) (26 . 27) (27 . 28) (28 . 29) (29 . 30) (30 . 31) (32 . 33) (34 . 34) (35 . 35) (36 . 36) (38 . 37) (39 . 38) (40 . 40) (42 . 41)) 4.446 {30/185:231} B:0 4.50002 [ 4.33335] ((1 . 2) (4 . 4) (7 . 7) (12 . 13) (14 . 15) (29 . 33)) 4.465 {0/8:15} B:0 4.50043 [ 4.33381] ((14 . 14) (29 . 30) (30 . 31) (32 . 33) (39 . 38) (40 . 40)) 10.065 {0/9:15} B:0 4.50154 [ 4.33505] ((14 . 14) (29 . 30) (30 . 31) (32 . 33) (39 . 38) (42 . 41)) 8.463 {1/12:15} B:0 SIMILARITY (1/min{score1}): 0.7989 [and 1/min{score2}: 0.8271] [3775, 6529]: Comparing 1m0w_A and 2scu_B, based on their crossing files. There are 43 (20 H + 23 S) secondary structure elements in 1m0w_A, of which 27 satisfy the size requirements. There are 35 (16 H + 19 S) secondary structure elements in 2scu_B, of which 19 satisfy the size requirements. 5.40002 [ 3.80007] ((29 . 2) (32 . 4) (36 . 5) (39 . 10) (40 . 11)) 5.561 {0/6:10} B:0 6.75007 [ 4.75020] ((28 . 6) (32 . 9) (37 . 14) (42 . 17)) 8.710 {0/5:6} B:0 6.75008 [ 4.75024] ((26 . 1) (29 . 4) (36 . 9) (38 . 11)) 9.065 {0/4:6} B:0 6.75011 [ 4.75032] ((1 . 6) (4 . 9) (9 . 15) (10 . 18)) 9.770 {0/2:6} B:0 6.75025 [ 4.75073] ((27 . 6) (34 . 12) (40 . 17) (43 . 19)) 11.956 {0/6:6} B:0 SIMILARITY (1/min{score1}): 0.4070 [and 1/min{score2}: 0.5767] -------------------------------------------------------------------------------------------------------------------------