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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 5782 1s9r_A)  (  481 1bwd_A)     0.2424   0.3333   1.7122 (   0   15   28)   0     0.6051   0.8289   33  24
( 5782 1s9r_A)  ( 1738 1g61_A)     0.2121   0.3684   2.8142 (   0    7   21)   0     0.5446   0.9346   33  19
( 5782 1s9r_A)  ( 1739 1g62_A)     0.5756   0.9968   4.5094 (   2   70  171)   1     0.5756   0.9968   33  19
( 5782 1s9r_A)  ( 2117 1h70_A)     0.5640   0.6439   2.5332 (  16  108  231)   0     0.6303   0.9125   33  22
( 5782 1s9r_A)  ( 2833 1jdw  )     0.6647   0.8096   3.1062 (   5  102  231)   0     0.6647   0.8096   33  27
( 5782 1s9r_A)  ( 5723 1rxx_A)     0.8913   0.9169   2.2979 (  16  272  435)   0     0.8913   0.9169   33  32
( 5782 1s9r_A)  ( 5782 1s9r_A)     1.0000   1.0000   0.0000 (   0  398  528)   0     1.0000   1.0000   33  33

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