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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 2833 1jdw  )  (  481 1bwd_A)     0.8249   0.9119   2.2364 (   8  112  253)   0     0.8249   0.9119   27  24
( 2833 1jdw  )  ( 1738 1g61_A)     0.6639   0.9316   5.0182 (   2   38  153)   1     0.6639   0.9316   27  19
( 2833 1jdw  )  ( 1739 1g62_A)     0.2222   0.3158   2.9742 (   0    6   15)   0     0.6980   0.9686   27  19
( 2833 1jdw  )  ( 2117 1h70_A)     0.7246   0.8308   2.4578 (   7   72  210)   0     0.7246   0.8646   27  22
( 2833 1jdw  )  ( 2833 1jdw  )     1.0000   1.0000   0.0000 (   0  217  351)   0     1.0000   1.0000   27  27
( 2833 1jdw  )  ( 5723 1rxx_A)     0.7396   0.6245   3.0872 (   2   54  190)   0     0.7712   0.6534   27  32
( 2833 1jdw  )  ( 5782 1s9r_A)     0.7882   0.6565   3.0514 (   7   93  231)   0     0.7882   0.6620   27  33

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