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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 2333 1hyn_P)  (   30 1a3a_A)     0.2000   0.3999   6.8840 (   0    3    6)   0     0.3290   0.4113   20  10
( 2333 1hyn_P)  (   55 1a6j_A)     0.4500   0.8989   4.7172 (   0   27   36)   0     0.4998   0.9946   20  10
( 2333 1hyn_P)  ( 2333 1hyn_P)     1.0000   1.0000   0.0000 (   0  161  190)   0     1.0000   1.0000   20  20

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