------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4210 1ne9_A) ( 433 1bo4_A) 0.5999 0.5999 3.8644 ( 0 11 15) 0 0.5999 0.5999 10 10 ( 4210 1ne9_A) ( 435 1bob ) 0.6917 0.3331 4.4439 ( 1 15 21) 0 0.6917 0.3331 10 21 ( 4210 1ne9_A) ( 610 1cjw_A) 0.8538 0.6788 4.7689 ( 2 26 36) 0 0.8538 0.6788 10 13 ( 4210 1ne9_A) ( 1657 1fy7_A) 0.5996 0.3158 6.0545 ( 0 13 15) 0 0.5996 0.3158 10 19 ( 4210 1ne9_A) ( 1831 1ghe_A) 0.9608 0.7580 6.0658 ( 2 32 45) 0 0.9608 0.7580 10 13 ( 4210 1ne9_A) ( 2356 1i12_A) 0.7983 0.7983 6.0465 ( 0 22 28) 0 0.7983 0.7983 10 10 ( 4210 1ne9_A) ( 2668 1iyk_A) 0.7932 0.7230 6.1719 ( 1 20 28) 0 0.7932 0.7230 10 11 ( 4210 1ne9_A) ( 2669 1iyk_A) 0.8634 0.5587 5.5634 ( 2 28 36) 0 0.8634 0.5587 10 16 ( 4210 1ne9_A) ( 3485 1kzf_A) 0.4124 0.3796 5.0018 ( 5 21 28) 0 0.6930 0.4368 10 16 ( 4210 1ne9_A) ( 3712 1lrz_A) 0.8967 0.7487 2.7117 ( 1 26 36) 0 0.8967 0.7487 10 12 ( 4210 1ne9_A) ( 3713 1lrz_A) 0.6734 0.4629 5.6430 ( 1 11 21) 0 0.6734 0.4629 10 15 ( 4210 1ne9_A) ( 3828 1m44_A) 0.4000 0.2857 4.2834 ( 0 5 6) 0 0.4000 0.3634 10 14 ( 4210 1ne9_A) ( 3954 1mk4_A) 0.4123 0.4049 5.3168 ( 5 21 28) 0 0.4123 0.4049 10 12 ( 4210 1ne9_A) ( 4148 1n71_A) 0.7958 0.6650 5.0006 ( 1 22 28) 0 0.7958 0.6650 10 12 ( 4210 1ne9_A) ( 4210 1ne9_A) 1.0000 1.0000 0.0000 ( 0 39 45) 0 1.0000 1.0000 10 10 ( 4210 1ne9_A) ( 4211 1ne9_A) 0.7898 0.6625 4.9494 ( 1 17 28) 0 0.7898 0.6625 10 12 ( 4210 1ne9_A) ( 4377 1nsl_A) 0.9688 0.7604 5.6523 ( 2 34 45) 0 0.9688 0.7604 10 13 ( 4210 1ne9_A) ( 4852 1p0h_A) 0.5314 0.4242 8.7275 ( 4 22 36) 0 0.5314 0.4242 10 19 ( 4210 1ne9_A) ( 5189 1q2y_A) 0.6917 0.6917 4.2542 ( 1 15 21) 0 0.6917 0.6917 10 10 ( 4210 1ne9_A) ( 5445 1qso_A) 0.7572 0.6996 6.5692 ( 2 23 28) 0 0.7572 0.6996 10 11 ( 4210 1ne9_A) ( 5446 1qst_A) 0.3999 0.3636 7.6240 ( 0 4 6) 0 0.3999 0.3636 10 11 ( 4210 1ne9_A) ( 5557 1r57_A) 0.5998 0.7494 5.1241 ( 0 7 15) 0 0.5998 0.7494 10 8 ( 4210 1ne9_A) ( 5841 1sqh_A) 0.4999 0.2273 5.5776 ( 0 7 10) 0 0.5222 0.4086 10 22 ( 4210 1ne9_A) ( 6003 1ufh_A) 0.6929 0.7659 6.0613 ( 1 16 21) 0 0.6929 0.7659 10 9 ( 4210 1ne9_A) ( 6244 1vhs_A) 0.8962 0.6913 5.2529 ( 1 29 36) 0 0.8962 0.6913 10 13 -------------------------------------------------------------------------------------------------------------------------