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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 3123 1k0w_A)  ( 1030 1e4c_P)     0.8666   0.9999   1.7904 (   0   67   78)   0     0.8666   0.9999   15  13
( 3123 1k0w_A)  ( 3123 1k0w_A)     1.0000   1.0000   0.0000 (   0   95  105)   0     1.0000   1.0000   15  15
( 3123 1k0w_A)  ( 4679 1ojr_A)     0.9331   0.6999   2.9615 (   1   73   91)   0     0.9331   0.6999   15  20
( 3123 1k0w_A)  ( 5133 1pvt_A)     0.8664   0.7646   2.9225 (   1   62   78)   0     0.8664   0.7646   15  17

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