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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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(  497 1bzy_A)  (   31 1a3c  )     0.7327   0.9147   2.9037 (   1   31   55)   0     0.7327   0.9147   15  12
(  497 1bzy_A)  (  497 1bzy_A)     1.0000   1.0000   0.0000 (   0   82  105)   0     1.0000   1.0000   15  15
(  497 1bzy_A)  (  863 1dkr_A)     0.5332   0.6663   5.2080 (   0   13   28)   0     0.5332   0.6663   15  12
(  497 1bzy_A)  (  864 1dkr_A)     0.5332   0.7268   4.9487 (   0   15   28)   0     0.5332   0.7268   15  11
(  497 1bzy_A)  (  920 1dqn_A)     0.8631   0.7628   4.7191 (   2   52   78)   0     0.8631   0.7628   15  17
(  497 1bzy_A)  ( 1101 1ecf_A)     0.5952   0.6204   5.3609 (   3   23   45)   0     0.5952   0.6204   15  14
(  497 1bzy_A)  ( 1619 1fsg_A)     0.8664   0.9283   2.0988 (   1   51   78)   0     0.8664   0.9283   15  14
(  497 1bzy_A)  ( 1703 1g2q_A)     0.5333   0.5714   3.4784 (   0   17   28)   0     0.6658   0.7131   15  14
(  497 1bzy_A)  ( 2209 1hgx_A)     0.7333   0.9998   2.5420 (   0   33   55)   0     0.7333   0.9998   15  11
(  497 1bzy_A)  ( 2755 1j7j_A)     0.6666   0.9992   3.7797 (   0   24   45)   0     0.6666   0.9992   15  10
(  497 1bzy_A)  ( 2960 1jlr_A)     0.6658   0.5878   4.8511 (   1   27   45)   0     0.6658   0.5878   15  17
(  497 1bzy_A)  ( 3517 1l1q_A)     0.3333   0.3571   5.4970 (   0    2   10)   0     0.4666   0.4999   15  14
(  497 1bzy_A)  ( 3628 1lh0_A)     0.5996   0.5996   6.1915 (   0   19   36)   0     0.5996   0.5996   15  15
(  497 1bzy_A)  ( 4398 1nul_A)     0.6184   0.7139   3.8070 (   3   26   45)   0     0.6184   0.7499   15  12
(  497 1bzy_A)  ( 4494 1o57_A)     0.5999   0.7498   4.0458 (   0   19   36)   0     0.6534   0.7956   15  12
(  497 1bzy_A)  ( 4502 1o5o_A)     0.5998   0.5998   5.1528 (   0   20   36)   0     0.5998   0.5998   15  15
(  497 1bzy_A)  ( 5277 1qb7_A)     0.5999   0.5624   4.5826 (   0   20   36)   0     0.5999   0.5624   15  16
(  497 1bzy_A)  ( 5892 1tc1_A)     0.7326   0.9143   2.5653 (   1   29   55)   0     0.7326   0.9143   15  12

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