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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 2960 1jlr_A)  (   31 1a3c  )     0.5294   0.7499   3.5759 (   0   21   36)   0     0.5294   0.7499   17  12
( 2960 1jlr_A)  (  497 1bzy_A)     0.5878   0.6658   4.8511 (   1   27   45)   0     0.5878   0.6658   17  15
( 2960 1jlr_A)  (  863 1dkr_A)     0.3529   0.4999   5.0943 (   0    5   15)   0     0.7057   0.9988   17  12
( 2960 1jlr_A)  (  864 1dkr_A)     0.3529   0.5454   3.4239 (   0   10   15)   0     0.6470   0.9992   17  11
( 2960 1jlr_A)  (  920 1dqn_A)     0.2940   0.2940   9.6238 (   0    5   10)   0     0.6703   0.6703   17  17
( 2960 1jlr_A)  ( 1101 1ecf_A)     0.6436   0.7768   3.6393 (   2   34   55)   0     0.6808   0.7968   17  14
( 2960 1jlr_A)  ( 1619 1fsg_A)     0.5294   0.6427   4.3754 (   0   23   36)   0     0.5294   0.6427   17  14
( 2960 1jlr_A)  ( 1703 1g2q_A)     0.5293   0.6427   4.6565 (   0   26   36)   0     0.6454   0.7813   17  14
( 2960 1jlr_A)  ( 2209 1hgx_A)     0.5293   0.8175   4.7719 (   0   19   36)   0     0.5293   0.8175   17  11
( 2960 1jlr_A)  ( 2755 1j7j_A)     0.4705   0.7993   4.9503 (   0   14   28)   0     0.5291   0.8962   17  10
( 2960 1jlr_A)  ( 2960 1jlr_A)     1.0000   1.0000   0.0000 (   0  109  136)   0     1.0000   1.0000   17  17
( 2960 1jlr_A)  ( 3517 1l1q_A)     0.6470   0.7855   3.7486 (   0   33   55)   0     0.6470   0.7855   17  14
( 2960 1jlr_A)  ( 3628 1lh0_A)     0.6470   0.7332   3.8691 (   0   37   55)   0     0.7055   0.7993   17  15
( 2960 1jlr_A)  ( 4398 1nul_A)     0.5882   0.8332   3.2967 (   0   27   45)   0     0.5882   0.8332   17  12
( 2960 1jlr_A)  ( 4494 1o57_A)     0.5877   0.8302   5.3716 (   1   27   45)   0     0.5877   0.8302   17  12
( 2960 1jlr_A)  ( 4502 1o5o_A)     0.8797   0.9950   2.4067 (   3   80  105)   0     0.8797   0.9950   17  15
( 2960 1jlr_A)  ( 5277 1qb7_A)     0.7057   0.7498   3.9679 (   0   44   66)   0     0.7643   0.8120   17  16
( 2960 1jlr_A)  ( 5892 1tc1_A)     0.5294   0.7496   4.4409 (   0   20   36)   0     0.5294   0.7496   17  12

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