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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 6256 1vi2_A)  (   41 1a4i_A)     0.6000   0.8571   2.6088 (   0    2   15)   0     0.6000   0.8571   10   7
( 6256 1vi2_A)  (  258 1b0a_A)     0.5999   0.8568   3.7309 (   0    0   15)   0     0.5999   0.8568   10   7
( 6256 1vi2_A)  (  505 1c1d_A)     0.5385   0.5736   4.9027 (   1    7   15)   0     0.5385   0.5736   10   9
( 6256 1vi2_A)  ( 1116 1edz_A)     0.6234   0.7001   5.5488 (   1    8   21)   0     0.6234   0.7493   10   8
( 6256 1vi2_A)  ( 1947 1gtm_A)     0.4998   0.5553   6.0133 (   0    4   10)   0     0.5991   0.6651   10   9
( 6256 1vi2_A)  ( 2015 1gz3_A)     0.5000   0.2941   3.7882 (   0    6   10)   0     0.5000   0.2941   10  17
( 6256 1vi2_A)  ( 2269 1hrd_A)     0.5385   0.4420   4.9185 (   1    7   15)   0     0.5385   0.4420   10  13
( 6256 1vi2_A)  ( 2308 1hwx_A)     0.5386   0.4719   4.5026 (   1    7   15)   0     0.5386   0.4719   10  12
( 6256 1vi2_A)  ( 3609 1leh_A)     0.4998   0.6245   5.9943 (   0    4   10)   0     0.6230   0.7490   10   8
( 6256 1vi2_A)  ( 3733 1lu9_A)     0.6000   0.6666   3.1673 (   0    6   15)   0     0.6000   0.6666   10   9
( 6256 1vi2_A)  ( 4350 1npy_A)     0.9999   0.9999   1.7277 (   0   28   45)   0     0.9999   0.9999   10  10
( 6256 1vi2_A)  ( 4446 1nyt_A)     0.9000   0.9999   1.9418 (   0   21   36)   0     0.9000   0.9999   10   9
( 6256 1vi2_A)  ( 6256 1vi2_A)     1.0000   1.0000   0.0000 (   0   30   45)   0     1.0000   1.0000   10  10

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